Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.8e-114 416.0 216 100.0
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 7.5e-81 304.3 186 85.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.8e-74 283.1 157 89.8
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.3e-74 282.7 157 90.4
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 7.3e-68 261.2 154 83.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 7.3e-68 261.2 157 81.5
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.6e-67 260.0 169 76.9
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.6e-67 258.8 154 84.4
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 8.0e-67 257.7 160 78.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.4e-66 256.9 155 81.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.8e-66 256.5 157 80.3
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.1e-66 255.8 157 79.0
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 4.0e-66 255.4 155 80.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 5.2e-66 255.0 157 80.3
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 5.2e-66 255.0 154 82.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.9e-66 254.2 158 79.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 8.9e-66 254.2 154 81.2
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 8.9e-66 254.2 154 81.8
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.5e-65 253.4 155 80.6
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.5e-65 253.4 162 78.4
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.0e-65 253.1 161 79.5
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-65 253.1 155 80.0
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-65 253.1 154 80.5
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 2.6e-65 252.7 160 78.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.6e-65 252.7 155 80.0
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.6e-65 252.7 153 81.0
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.6e-65 252.7 153 81.0
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.4e-65 252.3 160 77.5
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.4e-65 252.3 160 77.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 4.4e-65 251.9 158 77.2
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 5.8e-65 251.5 162 77.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 7.5e-65 251.1 154 79.9
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.3e-64 250.4 157 79.6
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.7e-64 250.0 167 74.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.2e-64 249.6 154 79.9
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.2e-64 249.6 156 77.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.2e-64 249.6 158 77.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.2e-64 249.6 154 81.2
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.9e-64 249.2 157 78.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.9e-64 249.2 155 78.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.9e-64 248.4 158 77.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 6.4e-64 248.1 157 77.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 6.4e-64 248.1 157 78.3
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.4e-63 246.9 157 78.3
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.4e-63 246.9 160 77.5
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.9e-63 246.5 155 78.7
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.9e-63 246.5 157 75.8
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.9e-63 246.5 154 79.2
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 2.4e-63 246.1 155 78.7
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 3.2e-63 245.7 155 76.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 7.0e-63 244.6 155 76.8
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 7.0e-63 244.6 154 78.6
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.6e-62 243.4 137 89.1
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.6e-62 243.4 154 77.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.6e-62 243.4 156 77.6
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.6e-62 243.4 156 77.6
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.0e-62 243.0 156 76.9
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.7e-62 242.7 155 76.1
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 2.7e-62 242.7 157 76.4
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.7e-62 242.7 154 77.9
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.5e-62 242.3 160 75.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.6e-62 241.9 163 73.6
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 6.0e-62 241.5 157 75.2
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 6.0e-62 241.5 154 77.9
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.8e-62 241.1 155 76.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 7.8e-62 241.1 157 74.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 7.8e-62 241.1 154 74.7
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.0e-61 240.7 155 75.5
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.0e-61 240.7 154 79.2
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.3e-61 240.4 160 72.5
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 3.0e-61 239.2 157 73.9
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 3.0e-61 239.2 157 73.9
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 5.0e-61 238.4 154 77.9
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.0e-61 238.4 151 81.5
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 6.6e-61 238.0 160 71.9
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 8.6e-61 237.7 157 73.2
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 8.6e-61 237.7 156 76.3
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.1e-60 237.3 154 76.0
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.9e-60 236.5 156 75.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.9e-60 236.5 154 77.9
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 2.5e-60 236.1 159 75.5
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 4.3e-60 235.3 154 75.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 4.3e-60 235.3 154 75.3
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 5.6e-60 235.0 179 65.9
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-59 233.4 161 72.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.6e-59 233.4 161 72.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-59 233.4 161 72.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.6e-59 233.4 161 72.0
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 2.8e-59 232.6 154 76.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.8e-59 232.6 154 76.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.6e-59 232.3 155 76.1
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.7e-59 231.9 160 71.9
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 4.7e-59 231.9 161 71.4
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-58 230.7 160 71.2
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.1e-58 230.7 185 64.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.3e-58 229.6 155 75.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 2.3e-58 229.6 161 70.2
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 4.0e-58 228.8 159 69.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 4.0e-58 228.8 159 69.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 4.0e-58 228.8 159 69.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 6.8e-58 228.0 157 74.5
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 6.8e-58 228.0 157 74.5
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 9.8e-57 224.2 154 70.1
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 3.7e-56 222.2 153 69.9
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.4e-56 221.5 143 78.3
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 8.3e-56 221.1 138 80.4
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 5.4e-55 218.4 154 68.8
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 9.2e-55 217.6 204 57.4
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.6e-54 216.9 245 50.2
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.1e-54 216.5 136 77.9
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.1e-54 216.5 144 75.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 5.1e-53 211.8 123 85.4
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.1e-52 210.7 144 72.9
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.3e-50 203.0 218 52.3
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 5.2e-50 201.8 158 66.5
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.6e-49 198.0 125 77.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 5.4e-47 191.8 161 60.2
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.1e-47 191.4 159 61.6
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.6e-46 188.7 187 55.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.7e-45 186.8 123 75.6
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.1e-43 177.9 297 39.7
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.1e-42 177.6 111 74.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 8.4e-40 167.9 140 66.4
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.3e-35 154.1 93 80.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-34 151.0 133 58.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 5.3e-34 148.7 107 72.9
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 4.5e-33 145.6 101 72.3
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 8.4e-32 141.4 154 48.1
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-28 130.6 77 79.2
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.6e-28 128.6 149 46.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 9.6e-28 127.9 132 52.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.6e-27 127.1 149 45.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.4e-26 124.0 152 42.8
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 9.0e-26 121.3 146 52.7
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 7.6e-25 118.2 85 68.2
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.1e-23 114.4 138 44.2
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.9 65 83.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.7e-22 109.8 65 81.5
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.8 96 62.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.8 96 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.0e-21 106.3 139 41.7
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 5.1e-21 105.5 64 81.2
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.4e-20 101.7 64 78.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 4.8e-19 99.0 127 42.5
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-18 96.3 101 56.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.6e-17 93.2 78 62.8
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 6.5e-08 62.0 69 52.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.9e-07 60.5 69 50.7
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 7.2e-07 58.5 62 53.2


User provided reference genes

Program Settings