Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 1.8e-56 222.2 106 100.0
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 5.4e-32 141.0 99 74.7
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 6.2e-28 127.5 108 65.7
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 1.4e-27 126.3 110 64.5
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 1.8e-27 125.9 108 63.0
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 3.1e-27 125.2 114 62.3
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 8.9e-27 123.6 105 63.8
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 2.6e-26 122.1 106 63.2
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.3e-25 119.8 115 59.1
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 1.7e-25 119.4 101 63.4
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 3.7e-25 118.2 110 58.2
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 6.4e-25 117.5 96 63.5
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.4e-24 116.3 108 59.3
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 2.4e-24 115.5 108 58.3
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 2.4e-24 115.5 116 55.2
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 3.2e-24 115.2 102 59.8
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 4.1e-24 114.8 108 60.2
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 4.1e-24 114.8 102 60.8
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 5.4e-24 114.4 110 55.5
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 7.0e-24 114.0 112 54.5
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 7.0e-24 114.0 99 63.6
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 9.2e-24 113.6 95 61.1
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.7e-23 112.1 102 61.8
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 3.5e-23 111.7 106 58.5
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 6.0e-23 110.9 105 57.1
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.3e-22 109.8 102 55.9
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.7e-22 109.4 106 57.5
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.7e-22 109.4 105 61.0
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.3e-22 109.0 96 57.3
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 3.9e-22 108.2 110 56.4
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 3.9e-22 108.2 117 53.8
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 5.0e-22 107.8 103 57.3
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 6.6e-22 107.5 110 55.5
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 8.6e-22 107.1 105 59.0
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.5e-21 106.3 106 56.6
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 2.5e-21 105.5 105 58.1
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.3e-21 104.8 113 52.2
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 4.3e-21 104.8 82 64.6
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 7.3e-21 104.0 122 53.3
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 9.5e-21 103.6 95 55.8
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 1.2e-20 103.2 116 55.2
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.2e-20 103.2 88 62.5
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.6e-20 102.8 109 56.9
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.8e-20 102.1 109 51.4
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.6e-20 101.7 93 57.0
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.6e-20 101.7 108 53.7
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 3.6e-20 101.7 93 57.0
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 3.6e-20 101.7 86 61.6
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 4.7e-20 101.3 93 57.0
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 6.2e-20 100.9 114 54.4
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.1e-19 100.1 78 59.0
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 1.4e-19 99.8 88 60.2
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 1.4e-19 99.8 86 61.6
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.8e-19 99.4 109 56.9
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.8e-19 99.4 109 56.9
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.8e-19 99.4 109 56.9
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 2.3e-19 99.0 75 64.0
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 2.3e-19 99.0 102 55.9
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.3e-19 99.0 91 58.2
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 4.0e-19 98.2 79 63.3
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 5.2e-19 97.8 84 64.3
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 5.2e-19 97.8 111 53.2
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.2e-19 97.8 111 53.2
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 5.2e-19 97.8 72 68.1
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 2.0e-18 95.9 115 51.3
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 2.6e-18 95.5 102 54.9
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 2.6e-18 95.5 90 58.9
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 7.5e-18 94.0 110 50.9
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 9.8e-18 93.6 110 51.8
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 1.3e-17 93.2 74 62.2
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.7e-17 92.8 111 51.4
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 3.7e-17 91.7 86 58.1
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 3.7e-17 91.7 104 52.9
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 4.9e-17 91.3 72 63.9
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.9e-17 91.3 97 50.5
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 2.4e-16 89.0 103 54.4
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.4e-16 89.0 99 51.5
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 3.2e-16 88.6 73 67.1
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 3.2e-16 88.6 103 53.4
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 2.7e-15 85.5 87 56.3
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 6.0e-15 84.3 81 55.6
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 2.3e-14 82.4 97 52.6
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 3.9e-14 81.6 103 48.5
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 1.9e-13 79.3 70 55.7
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 1.9e-13 79.3 90 53.3
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 5.6e-13 77.8 71 53.5
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.2e-12 76.6 106 50.0
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 7.6e-10 67.4 63 57.1
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 7.6e-10 67.4 64 53.1
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 1.7e-09 66.2 64 51.6
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 1.7e-09 66.2 72 44.4
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 2.2e-09 65.9 64 53.1
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 3.8e-09 65.1 68 51.5
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 1.9e-08 62.8 56 57.1
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 1.9e-08 62.8 77 45.5
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.4e-08 62.4 49 57.1
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.4e-08 61.2 45 57.8
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 9.2e-08 60.5 47 59.6
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 9.2e-08 60.5 47 59.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 9.2e-08 60.5 47 59.6
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.2e-07 60.1 48 60.4
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 1.2e-07 60.1 54 48.1
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.6e-07 59.7 48 60.4
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 2.1e-07 59.3 63 50.8
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.1e-07 59.3 48 58.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.1e-07 59.3 61 54.1
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.7e-07 58.9 60 48.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.7e-07 58.9 54 48.1
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.7e-07 58.9 48 58.3
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 3.5e-07 58.5 64 43.8
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.5e-07 58.5 50 56.0
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.5e-07 58.5 50 56.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.5e-07 58.5 49 59.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 4.6e-07 58.2 48 58.3
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 6.0e-07 57.8 36 69.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.0e-07 57.8 47 57.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 7.8e-07 57.4 48 56.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 7.8e-07 57.4 55 52.7
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 7.8e-07 57.4 48 54.2
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.0e-06 57.0 52 46.2
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 54.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.0e-06 57.0 66 48.5
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.0e-06 57.0 103 40.8
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 56.2
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 58.3
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.0e-06 57.0 48 54.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.3e-06 56.6 48 56.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-06 56.6 46 54.3
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-06 56.6 48 54.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-06 56.6 48 54.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.3e-06 56.6 48 54.2
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-06 56.6 57 50.9
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 1.3e-06 56.6 71 45.1
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.7e-06 56.2 48 56.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.7e-06 56.2 50 54.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.7e-06 56.2 40 57.5
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.3e-06 55.8 53 45.3
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 2.3e-06 55.8 53 45.3
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.3e-06 55.8 53 45.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.0e-06 55.5 45 55.6
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.0e-06 55.5 53 45.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 3.0e-06 55.5 50 52.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.0e-06 55.5 49 51.0
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.9e-06 55.1 53 49.1
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.7 42 54.8
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.1e-06 54.7 47 53.2
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.1e-06 54.7 48 52.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.1e-06 54.7 40 57.5
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.1e-06 54.7 42 57.1
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.6e-06 54.3 50 50.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 6.6e-06 54.3 46 54.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.6e-06 54.3 43 58.1
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.6e-06 54.3 48 54.2
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 6.6e-06 54.3 50 54.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 8.6e-06 53.9 48 54.2
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 8.6e-06 53.9 44 56.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 8.6e-06 53.9 43 58.1
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 8.6e-06 53.9 57 45.6
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.6e-06 53.9 46 56.5


User provided reference genes

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