Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 1.3e-188 662.9 330 100.0
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.2e-100 369.8 338 60.4
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.5e-93 347.1 350 59.7
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 1.6e-66 257.3 341 45.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.6e-66 257.3 334 45.2
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 2.6e-64 250.0 325 46.5
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 5.7e-64 248.8 328 44.8
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.3e-63 247.7 328 47.6
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.3e-63 247.7 327 45.9
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 6.3e-63 245.4 330 44.5
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.8e-62 243.8 187 64.7
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 2.4e-62 243.4 300 46.7
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 3.1e-62 243.0 347 43.8
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 3.1e-62 243.0 333 42.3
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 5.3e-62 242.3 329 44.1
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 3.5e-61 239.6 326 43.6
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.0e-60 238.0 341 44.3
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.0e-60 238.0 343 43.1
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.0e-60 238.0 336 43.8
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.3e-60 237.7 336 44.9
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.7e-60 237.3 335 41.2
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 3.8e-60 236.1 332 44.0
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 6.5e-60 235.3 326 44.2
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 8.5e-60 235.0 343 44.0
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.5e-59 234.2 336 42.9
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.2e-59 233.0 333 43.2
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 4.2e-59 232.6 333 43.5
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 2.1e-58 230.3 305 45.2
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.1e-58 230.3 342 41.2
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.1e-58 230.3 342 41.2
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.1e-58 230.3 342 41.2
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 2.7e-58 229.9 317 43.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 6.1e-58 228.8 309 42.4
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 8.0e-58 228.4 335 41.5
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 1.4e-57 227.6 322 42.5
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.3e-57 226.9 328 42.1
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 2.3e-57 226.9 339 41.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 3.0e-57 226.5 326 43.6
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 6.8e-57 225.3 338 42.9
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.2e-56 224.6 331 40.8
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.5e-56 224.2 348 41.1
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 2.6e-56 223.4 318 44.0
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 2.6e-56 223.4 328 39.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 3.4e-56 223.0 337 42.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 4.8e-55 219.2 307 41.7
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 6.3e-55 218.8 337 39.8
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 8.3e-55 218.4 333 38.4
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 3.1e-54 216.5 335 42.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 3.1e-54 216.5 345 39.4
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 7.0e-54 215.3 297 40.7
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 7.0e-54 215.3 310 40.3
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 2.0e-53 213.8 337 39.8
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.7e-53 213.4 346 38.2
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 2.7e-53 213.4 322 41.9
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.7e-53 213.4 342 40.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 5.9e-53 212.2 306 41.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 5.9e-53 212.2 300 42.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 7.7e-53 211.8 339 38.3
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 1.3e-52 211.1 316 40.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 1.3e-52 211.1 331 39.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 1.7e-52 210.7 333 36.9
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.9e-52 209.9 308 41.6
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.0e-52 209.1 334 39.5
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 1.1e-51 208.0 333 39.6
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.9e-51 207.2 338 40.5
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 2.5e-51 206.8 324 38.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 4.2e-51 206.1 314 39.8
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 5.5e-51 205.7 317 40.4
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 9.4e-51 204.9 339 40.7
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 9.4e-51 204.9 338 39.9
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 2.7e-50 203.4 345 40.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 4.7e-50 202.6 337 40.7
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.3e-49 200.3 327 41.9
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.0e-49 199.5 341 38.4
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 6.8e-49 198.7 324 38.6
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 3.4e-48 196.4 343 38.8
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 4.4e-48 196.1 332 39.2
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 5.7e-48 195.7 338 39.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 5.7e-48 195.7 338 39.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 5.7e-48 195.7 338 39.3
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 5.7e-48 195.7 344 38.7
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 9.8e-48 194.9 344 39.2
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 3.7e-47 193.0 361 37.4
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 4.9e-47 192.6 325 38.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-46 191.4 334 38.9
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-46 191.0 328 39.9
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.4e-46 191.0 311 40.2
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.2e-45 188.0 346 35.8
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 2.0e-45 187.2 341 36.4
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.0e-44 184.9 346 37.0
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.3e-44 184.5 301 39.9
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 5.0e-44 182.6 300 40.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.8e-41 174.1 273 39.6
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 2.3e-41 173.7 193 45.1
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 5.2e-41 172.6 266 39.8
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 6.8e-41 172.2 265 39.6
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 8.9e-41 171.8 331 35.6
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.7e-39 167.5 258 43.0
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 2.7e-37 160.2 307 35.5
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.3e-36 157.1 323 33.1
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 4.3e-35 152.9 340 34.1
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.6e-32 143.7 320 32.5
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 4.9e-31 139.4 321 29.6
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 5.4e-30 136.0 205 40.5
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 1.2e-29 134.8 214 38.8
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-28 131.0 156 45.5
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 1.7e-28 131.0 325 32.9
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 1.6e-26 124.4 304 33.6
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 3.6e-26 123.2 107 56.1
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 2.0e-24 117.5 95 54.7
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-24 117.1 246 35.0
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.8e-24 115.9 108 53.7
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 1.7e-23 114.4 343 31.2
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.7e-23 114.4 320 29.1
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 2.9e-23 113.6 331 29.0
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.1e-19 101.7 266 29.3
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 1.5e-19 101.3 94 53.2
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 2.3e-17 94.0 166 39.8
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 6.8e-17 92.4 107 48.6
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 5.8e-16 89.4 107 46.7
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 5.8e-16 89.4 107 46.7
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 7.6e-16 89.0 108 46.3
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 7.6e-16 89.0 108 46.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 9.9e-16 88.6 108 46.3
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 4.9e-15 86.3 107 47.7
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 7.8e-13 79.0 55 69.1
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.0e-12 78.6 110 41.8
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.0e-12 78.6 110 41.8
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 8.6e-12 75.5 97 43.3
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.5e-11 74.7 181 34.8
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 5.6e-11 72.8 100 43.0
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 8.9e-09 65.5 155 30.3
HanXRQChr10g0294721 Helianthus annuus HOM05D005574 ORTHO05D224381 2.9e-07 60.5 91 44.0


User provided reference genes

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