Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.1e-142 510.0 255 100.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 7.4e-136 487.3 245 99.2
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.1e-128 463.4 249 93.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-125 451.8 249 91.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.6e-122 443.0 249 88.4
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.1e-122 442.6 244 88.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.9e-121 438.3 249 86.3
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 5.1e-121 438.0 249 85.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.7e-121 437.6 249 86.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 8.7e-121 437.2 249 86.7
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.5e-120 436.4 249 84.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.5e-120 436.4 249 85.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.9e-120 436.0 249 86.7
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.9e-120 436.0 249 86.7
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.5e-120 435.6 246 87.0
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.5e-120 435.6 249 86.7
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 7.4e-120 434.1 249 86.3
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.7e-120 433.7 249 85.5
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 9.7e-120 433.7 249 85.5
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.3e-119 433.3 249 83.9
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.6e-119 433.0 249 85.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.7e-119 431.8 247 87.0
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 4.8e-119 431.4 249 84.3
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.4e-118 429.9 247 85.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.8e-118 429.5 249 85.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.4e-118 429.1 249 83.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.1e-118 428.7 243 85.2
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-118 428.3 249 83.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 5.3e-118 427.9 247 84.2
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.9e-118 427.6 249 83.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 9.0e-118 427.2 249 85.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.5e-117 426.4 249 83.9
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-117 426.4 247 84.2
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.6e-117 425.6 249 84.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.6e-117 425.6 249 84.3
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 7.7e-117 424.1 249 84.3
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.7e-117 424.1 247 83.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.0e-116 423.7 249 84.3
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-116 423.7 246 84.1
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.0e-116 423.7 249 82.7
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.7e-116 422.9 246 81.7
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.7e-116 422.9 246 83.3
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.2e-116 422.5 249 84.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.2e-116 422.5 250 83.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.9e-116 422.2 249 83.9
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.9e-116 422.2 246 84.6
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 3.8e-116 421.8 249 83.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 8.5e-116 420.6 246 84.1
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.1e-115 420.2 251 82.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-115 420.2 246 82.1
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.1e-115 420.2 249 83.1
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.1e-115 420.2 247 82.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.4e-115 419.9 246 83.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.5e-115 419.1 238 85.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 7.2e-115 417.5 249 81.9
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 9.4e-115 417.2 249 82.7
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 9.4e-115 417.2 249 82.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 9.4e-115 417.2 249 82.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-114 416.8 247 83.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-114 416.4 260 80.0
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.6e-114 416.4 246 81.3
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 3.6e-114 415.2 249 81.5
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 3.6e-114 415.2 245 82.0
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 6.1e-114 414.5 251 80.1
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 7.9e-114 414.1 246 83.3
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 7.9e-114 414.1 245 82.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.0e-113 413.7 247 81.8
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.4e-113 413.3 245 81.6
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.3e-113 412.5 232 85.3
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.3e-113 412.5 243 83.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.1e-113 411.4 243 82.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.1e-113 411.4 247 82.2
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.8e-113 410.6 260 79.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 8.8e-113 410.6 247 81.4
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.1e-112 410.2 240 82.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.3e-112 408.7 249 80.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.3e-112 408.3 249 80.7
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 5.7e-112 407.9 247 79.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 7.4e-112 407.5 249 79.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 2.2e-111 406.0 247 80.6
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.8e-111 405.6 286 71.0
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.8e-111 405.6 247 79.8
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.4e-110 403.3 247 79.4
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.8e-110 402.9 247 79.4
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.8e-110 402.9 247 78.5
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 4.1e-110 401.7 247 78.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-109 399.4 238 83.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.6e-109 399.1 225 84.9
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.6e-109 399.1 238 83.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.4e-109 398.7 247 80.6
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 7.7e-109 397.5 291 70.8
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.2e-108 396.0 247 78.1
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.9e-108 395.6 249 76.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 8.5e-108 394.0 246 75.6
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 7.9e-106 387.5 246 76.4
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.8e-105 386.3 249 78.3
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.0e-104 382.9 247 75.3
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.0e-104 382.9 233 82.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.4e-104 380.9 247 74.1
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.2e-101 373.6 250 74.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.0e-100 370.5 252 72.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 9.4e-99 364.0 249 75.9
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.0e-97 359.0 262 67.9
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.4e-94 349.4 235 71.5
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.2e-90 337.0 199 80.9
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 6.5e-84 314.7 236 70.8
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.6e-82 310.1 223 65.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.2e-79 299.7 227 67.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.7e-76 290.0 236 63.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.0e-76 288.5 249 63.1
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 7.2e-75 284.6 249 60.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 6.3e-71 271.6 149 85.9
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 7.3e-67 258.1 197 66.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.6e-66 256.9 136 89.0
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 9.8e-64 247.7 135 85.2
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.9e-63 245.4 241 53.5
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 5.0e-60 235.3 227 53.7
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.2e-56 224.2 131 80.9
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.7e-53 213.0 178 57.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.5e-45 186.0 132 75.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-36 156.0 170 48.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 4.9e-31 139.0 108 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.3e-27 126.3 152 46.1
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.8e-26 123.2 73 83.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.9e-22 110.5 79 70.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 5.1e-20 102.4 61 82.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.3e-11 73.2 129 43.4
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 9.6e-11 71.6 56 62.5
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.8e-10 70.1 50 74.0
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.1e-09 66.2 46 73.9
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.2e-08 64.7 46 71.7
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.2e-08 64.7 46 71.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-08 63.2 118 42.4
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 5.8e-08 62.4 163 29.4
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 7.6e-08 62.0 53 60.4
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.0e-07 61.6 163 30.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-06 58.2 48 66.7
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-06 57.8 39 74.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-06 57.8 39 74.4
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 2.5e-06 57.0 174 27.6
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.5e-06 55.8 39 71.8
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 5.5e-06 55.8 56 55.4


User provided reference genes

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