Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.5e-206 721.8 366 100.0
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 9.5e-169 597.0 333 90.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.0e-167 593.6 328 91.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.9e-162 575.1 335 86.9
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.5e-161 573.2 333 85.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.5e-161 572.4 328 86.3
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 9.5e-161 570.5 333 85.3
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.6e-160 569.7 331 85.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.8e-160 568.9 330 86.1
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.4e-159 566.6 331 84.9
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.4e-159 566.6 322 86.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.8e-159 566.2 335 85.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.3e-159 565.8 331 85.8
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 3.1e-159 565.5 335 84.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 4.4e-158 561.6 328 85.4
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 5.8e-158 561.2 334 82.0
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 7.5e-158 560.8 336 84.8
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 9.8e-158 560.5 328 84.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.3e-157 560.1 333 82.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 4.9e-157 558.1 335 83.6
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.1e-156 557.0 322 84.8
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.4e-156 556.6 323 84.8
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.4e-156 556.6 332 81.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.4e-156 555.8 328 84.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 7.0e-156 554.3 336 83.6
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 9.2e-156 553.9 331 83.7
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 9.2e-156 553.9 328 84.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.6e-155 553.1 331 82.2
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.0e-155 552.7 316 84.8
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.6e-155 551.6 338 82.2
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.0e-155 551.2 329 83.9
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.3e-154 550.1 322 84.8
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.0e-154 548.9 328 82.9
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.9e-154 548.5 328 82.3
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 5.0e-154 548.1 333 83.5
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.6e-154 547.7 331 84.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 8.6e-154 547.4 367 76.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.3e-153 545.4 328 82.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 3.3e-153 545.4 334 82.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.6e-153 544.7 309 85.8
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.6e-153 544.7 330 80.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 9.5e-153 543.9 330 80.6
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.2e-152 543.5 335 81.5
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.2e-152 543.5 321 84.4
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 4.7e-152 541.6 332 81.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.2e-152 541.2 332 81.0
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.1e-151 540.4 334 81.4
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.1e-151 540.4 334 81.4
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.1e-151 540.4 332 81.6
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.1e-151 540.4 325 80.9
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.8e-151 539.7 332 81.3
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.8e-151 539.7 332 81.3
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 4.0e-151 538.5 319 81.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 4.0e-151 538.5 331 80.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.2e-150 537.0 331 81.0
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.5e-150 536.6 334 80.8
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.0e-150 536.2 334 80.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 2.6e-150 535.8 331 81.3
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 3.4e-150 535.4 334 79.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 3.4e-150 535.4 321 84.1
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 4.4e-150 535.0 321 84.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.3e-149 533.5 331 79.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-149 531.9 345 78.0
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.7e-149 531.9 370 72.7
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.1e-148 530.4 324 80.2
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.4e-148 529.3 317 82.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.2e-148 528.9 333 78.4
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.1e-148 528.5 373 71.3
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 7.1e-148 527.7 325 81.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 9.2e-148 527.3 319 81.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 6.0e-147 524.6 321 83.2
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 6.0e-147 524.6 333 77.5
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.8e-147 524.2 316 82.3
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.0e-146 523.9 333 79.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-146 523.5 345 77.4
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.7e-146 523.1 376 71.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.3e-146 522.7 319 81.5
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.1e-145 520.4 332 77.1
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.1e-145 520.4 330 77.9
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.5e-145 519.2 326 78.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.5e-145 519.2 330 77.0
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.6e-144 516.5 303 84.8
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-144 516.5 326 77.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.6e-144 515.4 327 78.0
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.1e-144 514.2 331 79.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.1e-143 513.8 333 77.5
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 6.8e-143 511.1 331 76.1
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.0e-142 509.6 332 75.0
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.2e-141 506.1 397 68.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 6.0e-139 498.0 317 75.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 4.7e-136 488.4 245 99.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.4e-135 486.1 335 75.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 8.9e-135 484.2 328 72.9
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.8e-133 478.8 333 72.4
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.4e-132 476.9 315 73.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.0e-126 456.4 331 68.9
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.6e-126 454.5 324 69.1
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.3e-125 453.8 337 67.4
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.5e-123 445.7 332 66.0
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.9e-121 439.9 247 87.9
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 4.3e-121 438.7 242 88.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 6.2e-120 434.9 247 85.8
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.9e-117 426.0 247 83.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 8.4e-117 424.5 367 64.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-114 417.2 310 69.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.8e-112 408.7 320 65.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 6.2e-112 408.3 334 66.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 5.3e-111 405.2 329 66.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.0e-106 391.0 242 76.0
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 9.7e-97 357.8 316 59.2
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 5.7e-89 332.0 232 72.8
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 5.7e-89 332.0 188 83.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.7e-80 303.9 219 76.3
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.4e-73 279.3 319 48.6
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.0e-66 258.1 197 66.5
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.6e-65 253.4 263 50.2
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 5.7e-65 252.3 134 88.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 4.1e-63 246.1 134 85.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 6.5e-61 238.8 344 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.0e-57 227.3 241 51.0
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 6.3e-56 222.2 127 81.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-41 174.5 133 69.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.4e-41 172.9 133 69.2
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.5e-41 172.2 135 68.9
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.2e-39 166.8 120 70.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.6e-38 162.9 102 81.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.8e-38 162.2 126 69.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.8e-38 162.2 126 69.0
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.6e-37 158.7 126 67.5
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-35 154.8 162 50.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-34 151.4 211 50.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 4.6e-30 136.3 105 65.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.3e-26 124.0 73 83.6
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 4.4e-25 119.8 96 66.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.2e-24 117.5 201 44.8
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.7e-22 110.5 79 70.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 7.3e-20 102.4 61 82.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.6e-19 101.3 66 78.8
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 8.1e-19 99.0 73 64.4
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.4e-18 98.2 67 73.1
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.2e-17 95.1 85 56.5
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.6e-17 94.0 74 67.6
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 5.6e-12 76.3 51 72.5
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 2.1e-11 74.3 51 70.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.8e-11 73.9 50 76.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 2.2e-08 64.3 54 61.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 8.4e-08 62.4 163 29.4
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 1.4e-07 61.6 163 30.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 3.2e-07 60.5 60 56.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 3.5e-06 57.0 174 27.6


User provided reference genes

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