Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0294251 Helianthus annuus HOM05D004714 ORTHO05D005614 2.5e-63 245.4 129 100.0
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 6.3e-51 204.1 115 90.4
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 9.1e-50 200.3 115 88.7
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 1.3e-48 196.4 115 86.1
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.9e-48 195.3 112 86.6
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 3.2e-47 191.8 115 82.6
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 9.4e-47 190.3 115 80.0
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.2e-46 189.9 115 81.7
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 2.1e-46 189.1 115 79.1
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 2.1e-46 189.1 115 81.7
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 2.1e-46 189.1 115 82.6
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 2.7e-46 188.7 115 82.6
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 2.7e-46 188.7 115 81.7
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 2.7e-46 188.7 115 80.9
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 2.7e-46 188.7 115 81.7
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 2.7e-46 188.7 115 82.6
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 3.6e-46 188.3 115 80.9
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 6.1e-46 187.6 115 80.9
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 6.1e-46 187.6 115 80.0
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 8.0e-46 187.2 115 81.7
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 1.0e-45 186.8 115 80.0
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 1.0e-45 186.8 115 78.3
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 1.4e-45 186.4 115 80.0
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 1.4e-45 186.4 115 80.0
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 2.3e-45 185.7 115 80.0
RcHm_v2.0_Chr4g0400651 Rosa chinensis HOM05D004714 ORTHO05D005614 2.3e-45 185.7 115 79.1
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 3.0e-45 185.3 115 78.3
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 3.0e-45 185.3 115 80.0
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 4.0e-45 184.9 115 78.3
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 5.2e-45 184.5 115 79.1
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 5.2e-45 184.5 115 78.3
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 6.7e-45 184.1 115 80.0
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 8.8e-45 183.7 115 78.3
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 8.8e-45 183.7 115 79.1
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 1.2e-44 183.3 115 76.5
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 1.2e-44 183.3 114 78.9
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 1.5e-44 183.0 115 79.1
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.5e-44 183.0 115 78.3
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 1.5e-44 183.0 115 80.0
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 1.5e-44 183.0 115 78.3
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 2.0e-44 182.6 115 77.4
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 2.0e-44 182.6 115 76.5
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 2.6e-44 182.2 115 80.0
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 2.6e-44 182.2 115 77.4
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 2.6e-44 182.2 115 79.1
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 2.6e-44 182.2 115 79.1
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 3.3e-44 181.8 115 78.3
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 4.4e-44 181.4 115 79.1
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 4.4e-44 181.4 115 79.1
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 5.7e-44 181.0 115 77.4
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 5.7e-44 181.0 115 79.1
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 5.7e-44 181.0 115 79.1
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 5.7e-44 181.0 115 78.3
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 7.5e-44 180.6 115 79.1
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 7.5e-44 180.6 115 78.3
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 9.7e-44 180.3 115 77.4
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 9.7e-44 180.3 115 78.3
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 1.3e-43 179.9 115 77.4
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 1.7e-43 179.5 115 77.4
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 1.7e-43 179.5 115 77.4
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 1.7e-43 179.5 115 77.4
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.7e-43 179.5 115 76.5
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 1.7e-43 179.5 115 76.5
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 2.2e-43 179.1 115 77.4
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 2.2e-43 179.1 115 77.4
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 2.2e-43 179.1 115 75.7
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 2.8e-43 178.7 115 77.4
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 2.8e-43 178.7 115 77.4
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 76.5
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 76.5
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 76.5
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 76.5
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 74.8
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 3.7e-43 178.3 115 74.8
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 3.7e-43 178.3 113 75.2
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 4.8e-43 177.9 115 76.5
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 4.8e-43 177.9 115 75.7
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 4.8e-43 177.9 115 75.7
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 4.8e-43 177.9 115 77.4
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 6.3e-43 177.6 115 75.7
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 6.3e-43 177.6 115 76.5
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 6.3e-43 177.6 115 74.8
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 8.2e-43 177.2 104 82.7
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 8.2e-43 177.2 115 78.3
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 1.1e-42 176.8 115 74.8
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 1.1e-42 176.8 115 75.7
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 1.1e-42 176.8 110 79.1
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-42 176.8 131 70.2
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 1.4e-42 176.4 115 75.7
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 1.4e-42 176.4 111 78.4
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 1.8e-42 176.0 115 73.9
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 1.8e-42 176.0 115 75.7
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 1.8e-42 176.0 109 78.0
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.8e-42 176.0 115 74.8
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.8e-42 176.0 115 74.8
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 2.4e-42 175.6 113 76.1
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 2.4e-42 175.6 115 74.8
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 5.3e-42 174.5 115 72.2
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 1.2e-41 173.3 115 72.2
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 1.6e-41 172.9 115 73.0
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 2.7e-41 172.2 100 82.0
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 3.5e-41 171.8 115 73.0
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 4.5e-41 171.4 115 73.0
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 5.9e-41 171.0 115 72.2
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 6.5e-40 167.5 123 70.7
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 1.1e-39 166.8 140 64.3
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 5.5e-39 164.5 140 65.0
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 7.2e-39 164.1 113 68.1
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 2.7e-38 162.2 115 69.6
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 6.1e-38 161.0 94 80.9
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 1.0e-37 160.2 115 65.2
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 1.4e-37 159.8 115 67.8
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 3.0e-37 158.7 120 69.2
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 4.0e-37 158.3 115 65.2
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 1.2e-36 156.8 146 59.6
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 5.7e-36 154.5 115 66.1
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 1.1e-34 150.2 115 65.2
MD16G1253200 Malus domestica HOM05D004714 ORTHO05D005614 9.1e-34 147.1 94 75.5
CSS0032245 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 3.5e-33 145.2 95 78.9
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 3.2e-31 138.7 103 61.2
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 1.8e-29 132.9 100 65.0
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 2.3e-29 132.5 115 63.5
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 3.0e-29 132.1 115 64.3
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 2.0e-28 129.4 81 76.5
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 1.3e-27 126.7 115 60.9
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 2.8e-27 125.6 115 58.3
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 2.8e-27 125.6 115 58.3
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 2.8e-27 125.6 82 72.0
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 2.4e-26 122.5 81 71.6
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 7.0e-26 120.9 99 60.6
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 2.7e-25 119.0 115 57.4
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 2.9e-24 115.5 115 56.5
MCO01G546 Micromonas commoda HOM05D004714 ORTHO05D005614 3.0e-21 105.5 119 47.1
Hma1.2p1_0007F.1_g005200 Hydrangea macrophylla HOM05D004714 ORTHO05D005614 5.7e-20 101.3 73 65.8
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 7.5e-20 100.9 94 52.1
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 4.9e-19 98.2 115 52.2
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 4.6e-09 65.1 45 71.1
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 6.0e-09 64.7 53 58.5
RcHm_v2.0_Chr4g0400591 Rosa chinensis HOM05D004714 ORTHO05D005614 6.0e-09 64.7 34 94.1
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 3.0e-08 62.4 40 72.5


User provided reference genes

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