Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.7e-206 721.8 392 100.0
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.4e-37 161.4 211 48.8
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 3.3e-34 150.2 533 35.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 5.8e-23 112.8 246 37.8
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 7.6e-23 112.5 243 38.7
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.1e-18 98.6 225 39.1
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 9.6e-18 95.5 265 32.5
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.1e-17 94.4 260 32.3
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 2.8e-17 94.0 257 33.1
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.8e-17 94.0 261 34.9
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 8.1e-17 92.4 259 33.2
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.1e-16 92.0 240 35.8
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 2.4e-16 90.9 456 33.1
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 3.1e-16 90.5 257 31.9
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.0e-16 90.1 245 32.2
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 4.0e-16 90.1 255 31.8
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.3e-16 89.7 253 31.2
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 5.3e-16 89.7 255 32.2
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.9e-16 89.4 248 33.1
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 9.0e-16 89.0 237 33.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 9.0e-16 89.0 246 33.7
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 9.0e-16 89.0 257 33.1
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 9.0e-16 89.0 256 32.0
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.2e-15 88.6 252 31.7
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.2e-15 88.6 254 31.9
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.2e-15 88.6 254 31.9
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.2e-15 88.6 263 31.6
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.2e-15 88.6 252 31.7
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.5e-15 88.2 263 31.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.5e-15 88.2 257 34.6
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.0e-15 87.8 249 31.7
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.6e-15 87.4 248 32.3
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.6e-15 87.4 257 33.1
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.6e-15 87.4 253 32.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.6e-15 87.4 241 32.8
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 3.4e-15 87.0 253 33.2
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 3.4e-15 87.0 410 33.7
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 5.8e-15 86.3 252 31.7
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 7.6e-15 85.9 214 34.1
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 9.9e-15 85.5 254 31.5
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 9.9e-15 85.5 249 30.5
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-14 85.1 214 34.1
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.7e-14 84.7 229 33.6
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 1.7e-14 84.7 258 32.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 2.2e-14 84.3 152 38.8
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 2.2e-14 84.3 250 32.0
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.9e-14 84.0 235 32.8
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.9e-14 84.0 258 31.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 3.8e-14 83.6 262 31.3
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 3.8e-14 83.6 235 34.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.8e-14 83.6 254 31.9
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.8e-14 83.6 250 32.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.9e-14 83.2 264 31.4
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 6.4e-14 82.8 197 35.0
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 6.4e-14 82.8 258 31.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.4e-14 82.8 242 31.8
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 8.4e-14 82.4 243 32.1
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 8.4e-14 82.4 253 34.4
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 8.4e-14 82.4 256 32.8
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 8.4e-14 82.4 235 33.6
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 8.4e-14 82.4 235 33.6
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.1e-13 82.0 259 34.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.1e-13 82.0 249 31.3
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.4e-13 81.6 148 40.5
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.4e-13 81.6 239 32.6
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.4e-13 81.6 572 30.2
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.9e-13 81.3 257 31.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.9e-13 81.3 192 32.8
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.9e-13 81.3 149 40.9
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.9e-13 81.3 252 31.7
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.9e-13 81.3 252 31.3
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.9e-13 81.3 252 31.3
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 2.4e-13 80.9 214 33.6
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 2.4e-13 80.9 240 32.1
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.4e-13 80.9 142 40.8
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.4e-13 80.9 142 40.8
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.2e-13 80.1 157 38.9
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.2e-13 80.1 210 34.8
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.2e-13 80.1 240 30.8
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 5.4e-13 79.7 215 34.0
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 5.4e-13 79.7 145 41.4
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 5.4e-13 79.7 233 32.6
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 9.3e-13 79.0 242 31.4
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 9.3e-13 79.0 191 37.2
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 9.3e-13 79.0 258 32.6
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 9.3e-13 79.0 265 31.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 9.3e-13 79.0 226 33.6
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.2e-12 78.6 147 38.1
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.2e-12 78.6 191 37.2
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.2e-12 78.6 145 38.6
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 1.6e-12 78.2 197 34.0
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.6e-12 78.2 148 41.2
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.6e-12 78.2 196 36.2
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.1e-12 77.8 262 30.9
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.1e-12 77.8 255 31.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.1e-12 77.8 256 31.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 2.1e-12 77.8 190 36.3
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.1e-12 77.8 235 31.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 2.7e-12 77.4 207 34.8
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 4.6e-12 76.6 197 34.5
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.9e-12 75.9 263 28.9
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 7.9e-12 75.9 197 34.0
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.0e-11 75.5 208 35.1
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.0e-11 75.5 258 31.8
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.0e-11 75.5 158 36.7
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.8e-11 74.7 254 31.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.8e-11 74.7 197 35.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 2.3e-11 74.3 244 30.3
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.3e-11 74.3 231 32.5
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.3e-11 74.3 158 36.1
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.0e-11 73.9 145 37.2
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.0e-11 73.9 260 30.8
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 3.9e-11 73.6 248 29.8
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 5.1e-11 73.2 151 37.7
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 6.7e-11 72.8 261 29.5
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 6.7e-11 72.8 215 34.0
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 8.7e-11 72.4 189 34.9
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 8.7e-11 72.4 189 34.9
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.1e-10 72.0 145 36.6
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.5e-10 71.6 200 34.0
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 1.5e-10 71.6 246 28.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.9e-10 71.2 185 32.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 1.9e-10 71.2 138 38.4
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.3e-10 70.5 211 34.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 5.6e-10 69.7 241 30.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.6e-09 68.2 248 30.6
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-09 67.8 245 31.4
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-09 67.8 245 31.4
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.1e-09 67.8 257 30.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 4.8e-09 66.6 240 30.0
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 4.8e-09 66.6 246 31.7
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 6.2e-09 66.2 149 34.9
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 1.4e-08 65.1 178 34.3
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 5.3e-08 63.2 158 36.1
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 5.3e-08 63.2 110 40.0
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 5.3e-08 63.2 131 35.9
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 6.9e-08 62.8 210 29.5
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-07 61.6 160 34.4
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 4.5e-07 60.1 172 32.6
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 7.6e-07 59.3 212 29.7
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 7.6e-07 59.3 144 33.3
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 9.9e-07 58.9 110 38.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.2e-06 57.8 197 29.9
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.2e-06 57.8 131 32.8
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 2.9e-06 57.4 173 31.2
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 2.9e-06 57.4 173 31.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 2.9e-06 57.4 110 37.3
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 3.8e-06 57.0 259 29.0
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 6.4e-06 56.2 161 34.2


User provided reference genes

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