Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0289971 Helianthus annuus HOM05D003192 ORTHO05D003596 0.0e+00 1894.4 1086 100.0
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 3.4e-129 467.2 756 44.3
Lsat_1_v5_gn_5_109820 Lactuca sativa HOM05D003192 ORTHO05D003596 8.1e-91 339.7 642 41.9
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 6.2e-83 313.5 863 32.4
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 4.0e-82 310.8 812 34.4
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 4.0e-82 310.8 943 31.9
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 2.0e-81 308.5 794 35.3
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 7.6e-81 306.6 869 33.6
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.2e-78 299.3 802 34.5
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 1.9e-76 292.0 1086 30.1
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.3e-75 289.3 890 34.5
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 1.4e-74 285.8 1049 28.5
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.0e-74 284.3 825 32.4
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 6.9e-74 283.5 892 31.2
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.2e-73 282.7 972 32.1
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 2.6e-73 281.6 718 32.9
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 3.4e-73 281.2 856 34.1
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.7e-72 278.9 1044 28.1
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.7e-72 278.9 953 31.6
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 4.9e-72 277.3 1006 30.8
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 6.4e-72 276.9 962 31.4
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 1.4e-71 275.8 1067 27.9
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.2e-71 274.2 826 31.8
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 4.2e-71 274.2 1071 26.8
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 1.6e-70 272.3 812 34.4
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 1.3e-69 269.2 1039 28.1
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.8e-69 268.9 1072 29.1
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 1.8e-69 268.9 1042 29.5
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 2.3e-69 268.5 940 31.5
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 2.3e-69 268.5 935 29.0
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 5.1e-69 267.3 866 30.3
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 1.9e-68 265.4 632 34.2
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.9e-68 265.4 967 29.9
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.3e-68 264.2 957 31.1
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 9.6e-68 263.1 1064 26.8
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 6.2e-67 260.4 958 31.1
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.1e-66 259.6 530 35.1
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 3.1e-66 258.1 868 29.0
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 6.9e-66 256.9 1042 27.8
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 9.0e-66 256.5 971 30.0
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.0e-65 255.4 1045 27.3
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 2.6e-65 255.0 1041 28.3
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 4.5e-65 254.2 863 31.1
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 5.8e-65 253.8 849 30.9
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 7.1e-63 246.9 1073 26.7
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 1.2e-62 246.1 538 35.1
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 1.2e-62 246.1 823 28.4
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 1.6e-62 245.7 985 30.2
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 2.7e-62 245.0 810 31.1
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 3.5e-62 244.6 764 30.5
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 1.0e-61 243.0 1037 27.4
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 1.3e-61 242.7 412 38.6
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 6.7e-61 240.4 808 31.7
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 2.5e-60 238.4 706 31.2
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.3e-60 238.0 542 34.5
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 3.3e-60 238.0 960 29.9
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 3.3e-60 238.0 856 29.7
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 4.3e-60 237.7 966 26.6
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 5.7e-60 237.3 1045 26.8
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 9.6e-60 236.5 846 30.1
Os03g0691500 Oryza sativa ssp. japonica HOM05D003192 ORTHO05D003596 2.8e-59 235.0 966 28.7
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 2.8e-59 235.0 880 28.8
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 4.8e-59 234.2 1075 27.8
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 4.8e-59 234.2 1059 28.4
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 9.0e-58 229.9 814 31.8
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 9.0e-58 229.9 974 25.8
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 1.5e-57 229.2 828 30.3
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 2.0e-57 228.8 854 28.2
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.4e-57 228.0 911 29.0
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 1.0e-56 226.5 1030 26.6
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 1.0e-56 226.5 1009 30.3
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 1.0e-56 226.5 923 29.1
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 1.0e-56 226.5 926 27.0
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 1.3e-56 226.1 623 36.6
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 3.8e-56 224.6 959 27.8
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 8.4e-56 223.4 950 28.7
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 1.4e-55 222.6 397 37.3
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 3.2e-55 221.5 1071 25.2
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 9.3e-55 219.9 944 29.0
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 9.3e-55 219.9 908 27.2
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.6e-54 219.2 418 36.6
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.1e-54 218.8 1049 28.2
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 2.7e-54 218.4 842 30.9
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 4.6e-54 217.6 1114 26.2
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 4.6e-54 217.6 762 31.5
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 4.6e-54 217.6 1045 25.7
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 6.1e-54 217.2 908 28.1
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 7.9e-54 216.9 1056 26.9
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 7.9e-54 216.9 653 31.4
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 1.0e-53 216.5 1078 27.9
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 3.0e-53 214.9 840 28.8
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 3.9e-53 214.5 933 27.3
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 3.9e-53 214.5 354 39.3
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.7e-53 213.8 408 36.5
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 1.1e-52 213.0 984 27.1
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 1.5e-52 212.6 1075 29.0
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.5e-52 211.8 861 29.3
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 3.3e-52 211.5 943 27.3
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 4.3e-52 211.1 408 36.3
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 9.7e-52 209.9 433 38.6
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 3.7e-51 208.0 885 28.4
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 8.2e-51 206.8 929 28.1
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 1.1e-50 206.5 408 35.5
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 1.4e-50 206.1 983 27.2
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 1.4e-50 206.1 1020 26.8
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 4.1e-50 204.5 847 28.9
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 6.9e-50 203.8 959 27.7
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 9.0e-50 203.4 921 27.8
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 2.0e-49 202.2 877 27.4
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.6e-49 201.8 408 35.8
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 5.9e-49 200.7 1081 26.3
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 1.0e-48 199.9 854 31.9
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 1.0e-48 199.9 1078 27.2
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 2.2e-48 198.7 539 32.8
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 5.0e-48 197.6 736 30.2
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.9e-47 195.7 398 35.9
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 4.2e-47 194.5 604 31.1
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 5.5e-47 194.1 526 32.7
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 1.6e-46 192.6 835 27.9
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 3.6e-46 191.4 798 29.1
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 6.1e-46 190.7 970 26.6
Manes.10G098500 Manihot esculenta HOM05D003192 ORTHO05D003596 7.9e-46 190.3 764 27.2
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 7.9e-46 190.3 581 31.5
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 1.8e-45 189.1 772 27.6
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 3.0e-45 188.3 725 32.6
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 3.9e-45 188.0 698 31.5
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 3.9e-45 188.0 943 26.8
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 1.1e-44 186.4 867 28.0
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 1.5e-44 186.0 955 27.4
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 3.3e-44 184.9 513 30.4
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 4.3e-44 184.5 878 27.1
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 9.7e-44 183.3 995 25.7
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.3e-43 183.0 844 27.3
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 1.7e-43 182.6 925 27.6
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 2.2e-43 182.2 1041 27.8
Zm00001eb217110 Zea mays HOM05D003192 ORTHO05D003596 8.2e-43 180.3 1001 26.3
TPR.G9507 Trifolium pratense HOM05D003192 ORTHO05D003596 1.1e-42 179.9 793 27.9
Dinv29065 Davidia involucrata HOM05D003192 ORTHO05D003596 1.8e-42 179.1 380 35.8
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 5.3e-42 177.6 1032 26.5
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 9.1e-42 176.8 440 31.8
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 4.5e-41 174.5 880 26.9
AUR62017973 Chenopodium quinoa HOM05D003192 ORTHO05D003596 3.8e-40 171.4 302 39.7
ATR0767G239 Amborella trichopoda HOM05D003192 ORTHO05D003596 8.5e-40 170.2 1003 27.5
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 8.5e-40 170.2 794 25.9
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 8.5e-40 170.2 714 29.4
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 4.2e-39 167.9 653 30.5
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 4.7e-38 164.5 861 27.4
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 7.4e-36 157.1 950 26.7
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 3.7e-35 154.8 942 25.4
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 1.1e-34 153.3 727 29.4
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 1.1e-34 153.3 1024 23.8
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 7.0e-34 150.6 731 28.9
Dinv20194 Davidia involucrata HOM05D003192 ORTHO05D003596 1.5e-33 149.4 246 41.1
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 3.5e-33 148.3 1275 23.5
AUR62003664 Chenopodium quinoa HOM05D003192 ORTHO05D003596 5.5e-31 141.0 230 40.9
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 2.3e-29 135.6 730 26.3
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 1.5e-28 132.9 823 26.7
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 5.7e-28 131.0 188 41.5
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 2.4e-26 125.6 795 25.5
Ah.02g123570 Amaranthus hybridus HOM05D003192 ORTHO05D003596 3.5e-25 121.7 216 36.1
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 1.7e-24 119.4 949 24.4
Ah.03g139960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 7.2e-23 114.0 558 26.2
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 7.2e-23 114.0 733 27.6
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 5.2e-21 107.8 863 25.4
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 8.8e-21 107.1 821 27.0
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 2.0e-20 105.9 756 24.3
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 2.0e-20 105.9 1008 24.7
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 6.5e-16 90.9 870 23.3
BcaB03g12312 Brassica carinata HOM05D003192 ORTHO05D003596 5.5e-15 87.8 92 46.7
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 2.7e-14 85.5 693 22.7
Mapoly0094s0016 Marchantia polymorpha HOM05D003192 ORTHO05D003596 1.4e-13 83.2 916 22.6
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 3.0e-13 82.0 404 32.4
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 3.0e-13 82.0 404 32.4
EL10Ac6g15204 Beta vulgaris HOM05D003192 ORTHO05D003596 8.8e-13 80.5 798 24.3
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 2.0e-12 79.3 730 24.9
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 2.0e-12 79.3 655 24.3
QL01p016133 Quercus lobata HOM05D003192 ORTHO05D003596 9.1e-10 70.5 141 37.6
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 3.8e-08 65.1 637 24.2
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 2.5e-07 62.4 154 34.4
Atru.chr6.1256 Acer truncatum HOM05D003192 ORTHO05D003596 4.2e-07 61.6 140 30.7
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 4.2e-07 61.6 679 24.6
Rhsim11G0139800 Rhododendron simsii HOM05D003192 ORTHO05D003596 4.2e-07 61.6 91 40.7
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 3.6e-06 58.5 785 22.5
ECA234G0842 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-06 57.4 416 26.9


User provided reference genes

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