Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 5.8e-48 193.7 88 100.0
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.2e-15 85.5 48 83.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 9.7e-11 70.1 48 70.8
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.8e-10 68.6 55 58.2
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.8e-10 67.8 64 53.1
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 8.2e-10 67.0 64 50.0
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.4e-09 66.2 39 71.8
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.4e-09 66.2 66 50.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.4e-09 66.2 67 52.2
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.8e-09 65.9 39 69.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.4e-09 65.5 39 71.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.4e-09 65.5 41 68.3
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 2.4e-09 65.5 48 64.6
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 3.1e-09 65.1 67 50.7
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.1e-09 65.1 67 50.7
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.1e-09 65.1 64 51.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.1e-09 64.7 66 54.5
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.1e-09 64.7 39 71.8
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 9.1e-09 63.5 39 69.2
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 9.1e-09 63.5 48 60.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 9.1e-09 63.5 39 69.2
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 9.1e-09 63.5 64 48.4
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 9.1e-09 63.5 48 62.5
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 9.1e-09 63.5 39 69.2
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.1e-09 63.5 48 60.4
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.2e-08 63.2 38 71.1
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.2e-08 63.2 48 60.4
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.2e-08 63.2 39 66.7
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.2e-08 63.2 39 66.7
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.2e-08 63.2 39 69.2
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.5e-08 62.8 39 66.7
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.5e-08 62.8 39 66.7
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.5e-08 62.8 39 69.2
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.5e-08 62.8 39 69.2
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-08 62.8 39 66.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-08 62.8 48 60.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.0e-08 62.4 38 71.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.0e-08 62.4 64 46.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-08 62.4 39 69.2
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-08 62.4 39 69.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-08 62.4 39 69.2
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.0e-08 62.4 39 69.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.0e-08 62.4 64 48.4
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.0e-08 62.4 64 48.4
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 2.0e-08 62.4 49 61.2
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.6e-08 62.0 64 48.4
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.6e-08 62.0 38 68.4
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.6e-08 62.0 39 66.7
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.6e-08 62.0 39 66.7
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.6e-08 62.0 39 66.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.6e-08 62.0 67 50.7
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 3.4e-08 61.6 64 48.4
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 3.4e-08 61.6 64 46.9
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 3.4e-08 61.6 39 69.2
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 4.5e-08 61.2 39 64.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 4.5e-08 61.2 64 45.3
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.5e-08 61.2 38 68.4
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.5e-08 61.2 39 66.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.5e-08 61.2 38 68.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 4.5e-08 61.2 67 50.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 4.5e-08 61.2 39 69.2
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 5.9e-08 60.8 49 57.1
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 5.9e-08 60.8 38 65.8
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 5.9e-08 60.8 39 66.7
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 5.9e-08 60.8 39 66.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 5.9e-08 60.8 39 64.1
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 5.9e-08 60.8 39 66.7
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 7.7e-08 60.5 38 68.4
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 7.7e-08 60.5 38 68.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 7.7e-08 60.5 38 68.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 7.7e-08 60.5 38 68.4
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 7.7e-08 60.5 39 64.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 7.7e-08 60.5 39 64.1
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 7.7e-08 60.5 39 66.7
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.0e-07 60.1 64 45.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.0e-07 60.1 38 65.8
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 64.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 64.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 64.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 61.5
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 61.5
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 64.1
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.0e-07 60.1 39 64.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.7e-07 59.3 39 66.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.7e-07 59.3 39 66.7
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.7e-07 59.3 38 65.8
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.2e-07 58.9 49 55.1
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.2e-07 58.9 39 64.1
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.2e-07 58.9 39 61.5
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 3.8e-07 58.2 38 65.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.0e-07 57.8 39 61.5
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.0e-07 57.8 39 59.0
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.1e-06 56.6 39 61.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.4e-06 56.2 39 56.4
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.4e-06 56.2 39 61.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.9e-06 55.8 39 59.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.9e-06 55.8 39 59.0
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.5e-06 55.5 43 55.8
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 2.5e-06 55.5 38 57.9
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 4.2e-06 54.7 39 56.4
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 5.5e-06 54.3 38 63.2
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 7.2e-06 53.9 39 56.4


User provided reference genes

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