Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.6e-104 382.1 195 100.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.9e-63 245.0 212 63.2
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.1e-58 229.6 218 56.4
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 8.0e-58 227.6 212 58.5
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.3e-52 209.5 197 53.8
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.1e-49 199.1 210 51.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 3.1e-49 199.1 210 52.4
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 8.9e-49 197.6 210 50.5
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.5e-48 196.8 210 51.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 3.4e-48 195.7 210 50.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.7e-47 193.4 210 51.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.7e-47 193.4 195 50.8
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.7e-47 192.2 232 47.0
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.7e-47 192.2 210 51.4
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.7e-47 192.2 210 50.0
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 4.9e-47 191.8 210 49.0
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 4.9e-47 191.8 202 48.5
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 8.3e-47 191.0 202 49.5
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 8.3e-47 191.0 207 50.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 8.3e-47 191.0 207 50.7
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.4e-46 190.3 205 48.8
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 2.4e-46 189.5 195 50.3
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 3.2e-46 189.1 219 46.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.2e-46 189.1 210 49.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.1e-46 188.7 195 51.3
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 5.4e-46 188.3 195 50.8
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 7.1e-46 188.0 192 50.5
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 7.1e-46 188.0 199 51.3
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 7.1e-46 188.0 195 50.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 7.1e-46 188.0 210 48.6
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 9.2e-46 187.6 210 49.5
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.2e-45 187.2 210 48.6
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.2e-45 187.2 195 50.3
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.6e-45 186.8 202 49.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.6e-45 186.8 202 48.5
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.1e-45 186.4 195 50.3
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.7e-45 186.0 192 49.0
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 2.7e-45 186.0 210 49.0
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 3.5e-45 185.7 192 49.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 4.6e-45 185.3 195 51.3
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 4.6e-45 185.3 192 48.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.6e-45 185.3 199 46.7
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 4.6e-45 185.3 210 50.0
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.0e-45 184.9 210 49.0
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 7.8e-45 184.5 195 49.7
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 7.8e-45 184.5 210 47.1
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 7.8e-45 184.5 193 51.8
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.0e-44 184.1 210 49.5
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.3e-44 183.7 195 49.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.3e-44 183.7 192 47.9
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.7e-44 183.3 195 50.8
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.7e-44 183.3 202 48.0
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.7e-44 183.3 195 49.7
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.3e-44 183.0 192 47.9
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 3.0e-44 182.6 192 47.9
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 3.0e-44 182.6 201 48.3
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 3.0e-44 182.6 201 48.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 3.0e-44 182.6 202 46.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 3.9e-44 182.2 192 47.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 5.1e-44 181.8 210 48.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 8.6e-44 181.0 204 46.1
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 8.6e-44 181.0 203 47.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 8.6e-44 181.0 202 46.5
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 8.6e-44 181.0 202 47.5
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.1e-43 180.6 192 49.5
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.1e-43 180.6 195 48.7
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.5e-43 180.3 195 49.7
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.9e-43 179.9 192 47.4
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 3.3e-43 179.1 109 72.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 5.6e-43 178.3 210 46.7
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.6e-43 178.3 109 70.6
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 7.3e-43 177.9 202 47.0
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.3e-43 177.9 109 70.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 9.5e-43 177.6 210 47.1
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-42 176.8 201 46.8
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.1e-42 176.4 216 44.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.1e-42 176.4 210 47.6
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 2.1e-42 176.4 202 46.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 6.2e-42 174.9 198 49.5
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 8.1e-42 174.5 227 45.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.1e-41 174.1 109 70.6
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.8e-41 173.3 210 44.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.4e-41 172.9 109 68.8
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.1e-41 172.6 109 66.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-40 170.6 206 46.1
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-40 170.6 206 46.1
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.5e-40 170.2 109 68.8
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.7e-39 166.8 210 44.3
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 6.4e-39 164.9 194 46.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.4e-39 164.5 194 45.9
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.9e-38 163.3 195 46.2
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.2e-37 160.6 195 46.7
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-37 160.2 109 62.4
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.7e-37 159.5 195 44.1
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.7e-37 159.5 195 46.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 4.6e-37 158.7 96 71.9
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.8e-37 157.9 211 42.7
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.0e-36 157.5 96 69.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-36 157.5 195 46.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.0e-36 157.5 133 54.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 3.9e-36 155.6 173 50.9
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.5e-35 152.9 180 46.7
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.6e-35 151.0 109 66.1
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-34 149.8 196 42.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-33 146.7 109 58.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-33 146.7 109 58.7
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 6.9e-33 144.8 266 35.7
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 9.9e-32 141.0 109 56.0
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.4e-30 137.1 95 57.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.4e-30 137.1 95 57.9
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 4.2e-30 135.6 109 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.4e-30 135.2 109 52.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 5.4e-30 135.2 197 38.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.1e-27 127.5 157 46.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.3e-20 104.0 57 73.7
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.8e-15 85.9 48 83.3
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.2e-13 80.9 58 58.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.1e-12 75.5 45 68.9
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.7e-12 74.7 81 49.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 2.5e-11 73.2 113 35.4
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 9.6e-11 71.2 106 34.0
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.9e-06 57.0 43 58.1
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.2e-06 55.8 43 58.1
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 7.1e-06 55.1 125 36.0


User provided reference genes

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