Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 2483.4 1243 100.0
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 2132.8 1227 86.7
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 2028.1 1249 82.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2012.7 1263 79.4
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2011.1 1263 79.3
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1951.4 1261 76.8
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1264 76.5
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1933.3 1258 75.8
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1919.4 1264 74.8
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1262 75.4
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1269 74.8
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1909.8 1264 75.0
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1265 74.7
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1907.9 1262 74.9
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1264 74.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1904.8 1256 75.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1899.4 1255 74.9
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1899.4 1249 74.8
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1897.5 1260 74.3
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1895.6 1285 74.4
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1266 74.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1893.2 1256 74.4
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1892.1 1263 74.3
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1888.2 1262 73.8
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1887.1 1262 74.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1885.9 1253 74.7
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1882.5 1264 74.5
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1882.1 1262 73.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1878.2 1257 73.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1874.8 1273 73.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1872.1 1243 74.5
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1869.0 1257 74.1
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1306 71.5
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1254 73.4
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1862.8 1265 73.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1861.7 1254 73.4
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1860.9 1258 73.1
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1254 73.5
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1859.3 1258 73.1
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1256 73.1
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1858.2 1257 73.7
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1257 73.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1257 73.7
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1854.0 1258 72.4
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1852.4 1261 72.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1852.0 1256 73.3
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1266 72.8
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1260 73.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1848.9 1288 71.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1847.4 1258 72.7
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1845.9 1254 73.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1843.6 1269 73.4
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1843.2 1241 73.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1264 71.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1838.2 1264 72.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1837.4 1267 72.4
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1836.6 1264 71.6
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1833.5 1244 73.3
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1833.5 1261 72.3
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1832.8 1265 72.4
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1831.6 1264 72.5
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1260 71.6
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1828.9 1260 72.2
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1826.2 1265 71.5
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1264 71.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1823.9 1264 71.4
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1262 72.1
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1823.1 1265 71.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1818.5 1252 72.2
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1817.4 1270 71.1
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1813.1 1265 71.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1812.7 1325 68.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1811.6 1261 71.6
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1804.3 1277 70.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1803.1 1244 72.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1802.3 1309 69.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1801.2 1264 70.7
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1798.9 1264 71.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1796.6 1265 70.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1796.2 1264 70.8
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1793.5 1267 70.8
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1791.9 1261 70.5
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1789.2 1523 62.1
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1788.1 1265 70.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1785.8 1272 70.3
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1774.2 1290 69.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1761.5 1253 70.6
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1759.6 1262 70.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1758.8 1251 70.5
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1724.9 1161 73.6
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1718.7 1211 70.3
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1707.6 1263 67.3
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1684.1 1243 67.5
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1681.0 1161 71.1
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1609.3 1090 74.1
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1584.3 1045 75.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1554.3 1080 70.7
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1523.8 1004 74.6
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1515.4 1037 73.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1484.2 1091 69.7
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1451.0 1033 70.4
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1449.1 1062 67.7
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1357.0 1017 66.8
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1354.3 926 73.1
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1329.3 856 76.2
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1260.0 1393 48.8
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1194.9 1358 47.9
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1194.5 1253 53.2
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1105.5 746 72.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 2.9e-310 1068.9 774 69.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.8e-304 1049.7 858 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 3.6e-284 982.2 1160 45.1
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 7.7e-279 964.5 1008 53.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-261 907.1 592 76.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.9e-241 839.0 538 76.4
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.0e-239 833.6 855 53.1
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 2.6e-202 710.3 446 76.9
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 6.0e-199 699.1 1434 32.0
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-179 635.2 456 72.6
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.5e-153 545.8 490 58.2
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 7.2e-152 542.7 306 84.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.6e-119 434.1 316 67.7
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.9e-99 368.6 205 85.4
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.9e-92 344.7 372 47.8
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.0e-89 334.7 316 57.6
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 7.3e-88 330.1 273 65.6
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 7.3e-88 330.1 273 65.6
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 7.3e-88 330.1 273 65.6
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-87 327.8 194 78.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 9.6e-80 303.1 255 59.2
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 1.3e-79 302.8 172 84.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 7.6e-77 293.5 230 67.0
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 4.9e-76 290.8 226 67.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 3.0e-73 281.6 159 86.8
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 6.9e-70 270.4 152 82.9
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.4e-62 245.4 267 50.2
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.3e-62 244.2 447 34.7
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 7.2e-59 233.8 185 65.9
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 8.7e-57 226.9 201 60.2
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.3e-56 224.9 167 69.5
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.3e-55 223.0 151 72.2
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.1e-51 209.9 132 74.2
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.2e-51 208.0 143 74.1
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.8e-44 184.9 131 67.9
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.4e-43 183.0 182 54.4
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-43 182.6 141 61.7
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 7.9e-42 177.2 120 76.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 4.1e-38 164.9 111 72.1
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.6e-37 162.9 108 74.1
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 2.0e-37 162.5 102 77.5
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.0e-37 162.5 98 77.6
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.5e-37 161.8 98 83.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.0e-36 157.9 108 71.3
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.4e-35 153.7 108 70.4
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 9.4e-35 153.7 108 70.4
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.0e-34 150.6 108 70.4
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 8.8e-33 147.1 89 83.1
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.1e-30 138.7 81 75.3
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-28 133.7 108 67.6
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.2e-27 128.6 78 74.4
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 5.5e-27 127.9 124 54.8
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 3.7e-23 115.2 65 76.9
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.2e-20 105.9 107 47.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-18 99.8 62 75.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 5.2e-17 94.7 79 62.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 6.8e-17 94.4 82 59.8
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-15 90.1 52 80.8
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 5.4e-14 84.7 99 48.5
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.0e-13 82.8 57 64.9
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 3.8e-12 78.6 45 82.2
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.6e-08 65.9 69 40.6
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.4e-08 65.5 378 21.4
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 3.7e-07 62.0 52 59.6


User provided reference genes

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