Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 0.0e+00 1163.3 689 100.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.8e-105 386.3 562 46.4
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.5e-87 328.2 594 42.3
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 4.5e-47 193.7 617 32.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.6e-44 185.3 597 32.5
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 6.4e-41 173.3 365 35.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.1e-40 172.6 439 34.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.2e-40 171.0 614 29.6
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 9.2e-40 169.5 429 34.7
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 3.5e-39 167.5 560 31.2
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 4.6e-39 167.2 402 32.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.3e-38 165.6 533 30.4
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 8.6e-38 162.9 373 34.9
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 3.3e-37 161.0 463 32.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 4.3e-37 160.6 265 41.9
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 5.6e-37 160.2 372 36.6
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.7e-36 157.1 295 40.0
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 6.2e-36 156.8 563 28.1
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.1e-35 156.0 622 29.1
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.4e-35 155.6 431 35.7
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.8e-35 155.2 601 28.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.8e-35 155.2 449 32.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.1e-35 154.5 388 34.8
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 4.0e-35 154.1 388 34.5
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.8e-35 153.3 615 29.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.2e-34 152.5 545 28.8
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.2e-34 152.5 370 35.1
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 4.4e-34 150.6 356 34.3
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 9.8e-34 149.4 561 29.4
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.8e-34 149.4 290 37.6
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.3e-33 149.1 436 33.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.2e-33 148.3 304 35.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.2e-33 148.3 545 29.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 2.2e-33 148.3 267 40.8
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.2e-33 148.3 433 33.3
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.3e-33 146.4 460 30.2
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 8.3e-33 146.4 383 34.2
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.1e-32 146.0 370 34.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.4e-32 144.8 391 33.0
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.1e-32 144.1 331 35.3
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.6e-31 142.1 297 36.7
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.1e-31 141.7 551 29.0
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.7e-31 141.4 431 31.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.5e-31 141.0 481 29.5
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-31 141.0 435 31.0
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.5e-31 141.0 374 32.4
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.6e-31 140.6 272 40.1
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 6.0e-31 140.2 337 37.7
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 6.0e-31 140.2 368 34.5
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.0e-30 139.4 250 39.6
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-30 138.7 561 28.0
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.3e-30 138.3 513 30.6
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.9e-30 137.5 319 34.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-29 136.0 221 41.6
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.1e-29 136.0 358 31.6
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 5.6e-29 133.7 352 32.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.6e-29 133.7 479 29.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 5.6e-29 133.7 498 29.9
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 9.5e-29 132.9 602 27.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 9.5e-29 132.9 207 42.5
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.6e-28 132.1 272 36.0
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.6e-28 132.1 491 29.5
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.1e-28 131.7 252 38.1
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 2.8e-28 131.3 275 34.5
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.6e-28 131.0 363 32.5
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.2e-28 130.2 258 36.0
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.3e-27 128.3 285 34.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.2e-27 127.1 307 34.5
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 5.2e-27 127.1 180 43.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-26 125.9 270 35.6
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.5e-26 125.6 424 26.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.4e-26 124.0 417 29.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.8e-26 123.6 339 33.9
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 5.8e-26 123.6 347 32.6
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 5.8e-26 123.6 119 53.8
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.2e-25 121.7 269 33.1
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 2.2e-25 121.7 274 35.4
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-24 119.4 334 32.9
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.4e-24 119.0 193 39.9
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.4e-24 119.0 599 28.4
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.4e-24 119.0 253 36.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.4e-24 119.0 498 28.1
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.9e-24 118.6 289 31.5
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.4e-24 118.2 374 31.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.1e-24 117.5 575 27.7
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 5.4e-24 117.1 195 42.1
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 7.1e-24 116.7 225 34.7
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 7.1e-24 116.7 274 32.1
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.6e-23 115.5 302 32.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-23 115.2 282 31.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.1e-23 115.2 282 31.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.1e-23 115.2 358 33.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.7e-23 114.8 283 31.1
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.7e-23 114.8 647 25.2
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 6.0e-23 113.6 294 31.0
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 6.0e-23 113.6 294 31.0
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.3e-22 112.5 249 34.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.9e-22 110.9 275 31.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 3.9e-22 110.9 279 29.7
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.9e-22 110.9 272 31.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.6e-22 110.2 283 32.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.6e-22 110.2 261 34.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 8.6e-22 109.8 267 32.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 8.6e-22 109.8 352 29.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-21 109.4 271 30.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 4.3e-21 107.5 277 35.0
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 5.6e-21 107.1 167 45.5
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.7e-20 104.0 366 30.3
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 6.2e-20 103.6 542 27.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 2.4e-19 101.7 175 36.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 2.4e-19 101.7 175 36.0
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.4e-19 101.7 161 41.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 5.2e-19 100.5 266 29.7
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 5.2e-19 100.5 522 26.1
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 6.8e-19 100.1 399 26.3
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 8.9e-19 99.8 262 30.5
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.5e-18 99.0 465 28.4
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.9e-17 94.0 261 29.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 6.4e-17 93.6 208 32.7
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 6.4e-17 93.6 104 46.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.9e-16 92.0 564 25.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.4e-16 91.7 345 30.1
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 2.4e-16 91.7 199 35.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.2e-16 89.7 320 30.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-15 89.4 372 25.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 4.6e-15 87.4 240 32.5
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.3e-14 85.1 265 27.9
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 8.7e-14 83.2 211 34.6
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.5e-13 82.4 163 36.8
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 5.6e-13 80.5 227 32.2
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.2e-12 79.3 153 37.3
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-12 79.0 101 38.6
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.8e-11 75.5 90 40.0
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 2.4e-11 75.1 83 43.4
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.1e-11 74.7 128 40.6
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 4.0e-11 74.3 163 31.3
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.0e-11 73.2 62 50.0
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.6e-10 71.6 365 24.4
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.6e-10 71.6 68 45.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.3e-09 69.3 112 38.4
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.8e-09 67.8 119 37.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 4.9e-09 67.4 208 26.9
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 6.4e-09 67.0 148 32.4
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.9e-08 65.5 155 33.5
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.4e-08 65.1 54 59.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.2e-08 64.7 162 34.0
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.2e-08 64.7 162 34.0
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-08 63.5 152 32.2
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.2e-07 62.8 57 50.9
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.3e-06 58.5 394 24.4
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.7e-06 56.6 233 23.6


User provided reference genes

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