Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 0.0e+00 1101.3 595 100.0
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 0.0e+00 1075.5 597 97.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.2e-285 986.1 598 87.8
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.3e-279 966.1 595 85.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.6e-279 965.7 588 83.8
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.2e-277 959.5 594 85.2
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.2e-277 959.5 594 85.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.3e-273 945.3 596 85.1
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.5e-268 926.8 597 81.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-267 925.6 596 80.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-267 925.2 596 80.2
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 7.2e-267 923.7 596 80.7
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 9.4e-267 923.3 596 79.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.7e-266 921.8 599 80.1
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 6.1e-266 920.6 596 80.5
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.0e-265 918.3 598 84.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 8.8e-265 916.8 596 78.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 8.8e-265 916.8 596 79.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.3e-263 912.9 596 79.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.0e-261 905.6 598 78.1
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.5e-260 900.2 596 79.4
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 9.4e-259 896.7 594 80.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.6e-258 896.0 596 79.4
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.1e-258 895.6 597 79.9
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.0e-257 891.7 595 78.3
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.6e-256 888.6 598 81.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.6e-256 888.6 594 78.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 4.4e-256 887.9 596 80.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.7e-256 887.5 594 77.9
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.2e-255 885.6 595 81.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 4.8e-255 884.4 587 80.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.8e-255 884.4 596 78.2
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.3e-255 884.0 594 76.6
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 8.2e-255 883.6 595 76.5
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.8e-254 882.5 596 79.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.6e-253 878.6 594 76.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 3.5e-253 878.2 598 78.6
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.1e-250 869.0 594 77.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 2.7e-250 868.6 603 78.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.7e-250 867.8 595 74.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 8.0e-250 867.1 598 78.9
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.3e-249 865.5 594 75.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.6e-248 862.1 594 75.8
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.4e-248 861.7 594 76.3
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 9.7e-248 860.1 595 76.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 9.7e-248 860.1 600 75.5
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.2e-247 859.0 607 73.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.8e-247 858.6 605 70.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.8e-247 858.6 605 70.7
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.1e-246 856.7 599 74.5
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.4e-246 855.5 602 75.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 3.1e-246 855.1 594 75.4
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.2e-245 853.2 594 75.4
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.6e-245 852.8 599 76.6
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.9e-244 848.6 594 74.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.9e-244 848.6 596 74.2
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.8e-244 848.2 606 73.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 6.5e-244 847.4 599 76.1
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.1e-242 842.4 606 71.9
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.7e-242 842.0 598 73.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.6e-242 841.6 600 74.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.6e-242 841.6 600 73.8
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.7e-242 841.3 600 73.7
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.4e-241 839.7 595 76.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.8e-241 839.3 595 74.3
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 6.8e-241 837.4 598 74.6
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.3e-239 833.2 596 74.0
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.2e-239 832.4 600 72.8
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.8e-239 832.0 606 71.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.8e-239 831.2 600 72.8
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.8e-238 829.3 596 72.7
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.8e-238 829.3 600 72.2
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.1e-238 828.2 602 72.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 7.0e-238 827.4 594 72.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 7.0e-238 827.4 594 72.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 9.1e-238 827.0 600 73.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-237 826.2 599 73.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.6e-237 826.2 601 74.2
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.0e-237 825.9 600 72.2
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.5e-237 825.1 603 72.5
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 7.7e-237 823.9 595 77.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.0e-236 823.5 594 73.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-236 823.5 594 73.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.0e-236 823.5 594 73.2
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-236 822.0 597 74.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.9e-235 819.3 600 73.3
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.2e-235 818.1 597 72.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.5e-235 817.8 615 72.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.1e-234 815.8 604 70.0
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.2e-232 810.1 596 71.5
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.3e-231 806.6 606 70.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.3e-231 806.6 602 71.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-231 806.6 871 54.3
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-231 806.2 594 70.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.7e-231 806.2 594 73.6
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-231 805.8 594 70.2
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.4e-230 802.4 602 71.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-229 800.0 588 71.3
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 4.5e-229 798.1 609 71.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 3.3e-227 792.0 593 72.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.7e-226 788.1 596 72.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.4e-225 786.6 593 72.0
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.4e-225 786.6 604 71.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 7.8e-221 770.8 593 71.8
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 5.0e-220 768.1 602 70.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.8e-218 762.3 594 67.0
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.3e-217 759.2 644 66.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-216 756.1 545 72.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 4.4e-216 755.0 553 69.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.6e-213 746.5 594 65.8
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 4.6e-213 745.0 606 66.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.4e-208 728.8 610 66.1
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.9e-207 725.7 610 65.9
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.5e-205 718.8 600 65.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 8.6e-204 714.1 618 63.8
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 4.4e-200 701.8 593 65.8
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 3.8e-199 698.7 596 63.9
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-198 697.2 602 64.6
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.9e-184 647.5 567 61.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.2e-174 615.9 475 70.3
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.1e-169 599.0 516 67.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 5.5e-166 588.6 499 66.9
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-156 556.2 598 54.7
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 2.1e-149 533.5 603 51.2
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 3.9e-148 529.3 595 49.9
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.6e-139 500.0 599 50.6
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.8e-129 467.2 597 50.1
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.8e-124 450.7 614 42.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.3e-116 423.7 587 42.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.8e-91 339.3 243 70.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 4.6e-88 329.7 209 77.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 9.3e-73 278.9 623 37.1
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.6e-72 278.1 322 50.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 6.7e-63 246.1 235 61.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.4e-62 242.7 269 53.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.9e-57 228.0 577 29.6
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.6e-48 197.2 148 68.2
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 5.7e-38 163.3 151 58.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.3e-29 135.6 98 68.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.1e-28 132.5 627 27.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 8.5e-26 122.9 68 82.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-25 121.7 201 39.3
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.7e-22 109.4 78 64.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 8.2e-21 106.3 78 62.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-17 95.9 107 44.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.1e-16 91.7 153 41.8
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 2.8e-13 81.3 90 42.2
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.4e-12 78.2 59 66.1
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 2.0e-06 58.5 94 37.2


User provided reference genes

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