Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 2.1e-125 453.8 601 100.0
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 6.2e-101 372.5 604 89.1
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.0e-79 302.0 223 74.9
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 3.2e-65 253.8 194 68.6
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.6e-64 251.5 195 67.7
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.0e-63 248.8 195 67.7
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 1.1e-62 245.4 239 58.2
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.1e-60 238.8 235 57.4
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.1e-60 238.8 235 57.4
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.8e-60 238.0 243 57.6
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.6e-59 235.0 171 70.2
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 5.9e-59 233.0 245 57.6
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 9.4e-57 225.7 240 56.2
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 4.7e-56 223.4 232 55.6
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 4.7e-56 223.4 231 56.3
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 4.7e-56 223.4 182 65.4
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 8.0e-56 222.6 183 63.9
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 8.0e-56 222.6 230 56.1
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.8e-55 221.5 193 64.2
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 2.3e-55 221.1 240 54.6
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 3.0e-55 220.7 231 55.8
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 4.0e-55 220.3 230 59.1
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 5.2e-55 219.9 193 64.2
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 5.2e-55 219.9 193 64.2
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 5.2e-55 219.9 190 60.5
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.2e-54 218.8 244 53.7
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 2.0e-54 218.0 246 54.1
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 2.6e-54 217.6 243 53.9
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 4.4e-54 216.9 224 57.1
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 5.7e-54 216.5 184 62.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 7.5e-54 216.1 223 55.2
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 7.5e-54 216.1 235 57.0
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 7.5e-54 216.1 187 63.6
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 3.7e-53 213.8 236 54.2
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 4.8e-53 213.4 167 65.3
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.8e-52 211.5 233 54.5
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 1.8e-52 211.5 234 56.0
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.4e-52 211.1 169 65.7
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.4e-52 211.1 195 60.5
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.1e-52 210.7 204 60.8
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 5.3e-52 209.9 189 60.3
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 9.1e-52 209.1 197 56.3
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.2e-51 208.8 208 58.2
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.6e-51 208.4 228 54.4
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 2.7e-51 207.6 190 63.2
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 2.7e-51 207.6 180 62.8
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 3.5e-51 207.2 185 61.1
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 3.5e-51 207.2 254 50.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 3.5e-51 207.2 232 52.2
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 4.5e-51 206.8 227 52.0
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.0e-50 205.7 242 50.0
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.0e-50 205.7 225 52.9
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.0e-50 205.7 225 52.9
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 1.0e-50 205.7 236 53.8
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 1.7e-50 204.9 233 55.8
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 2.9e-50 204.1 234 54.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.9e-50 204.1 243 51.0
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.9e-50 204.1 168 64.3
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 3.8e-50 203.8 165 66.1
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 3.8e-50 203.8 165 66.1
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 3.8e-50 203.8 121 82.6
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.0e-50 203.4 242 49.6
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 5.0e-50 203.4 165 65.5
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 5.0e-50 203.4 165 65.5
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 5.0e-50 203.4 165 65.5
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 5.0e-50 203.4 235 52.3
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.5e-49 201.8 212 58.0
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 1.5e-49 201.8 229 53.3
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.5e-49 201.1 170 64.7
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 2.5e-49 201.1 172 61.6
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 3.2e-49 200.7 160 63.8
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.6e-48 198.4 227 53.7
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.6e-48 198.4 227 53.7
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.6e-48 198.4 232 53.0
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 3.6e-48 197.2 217 53.5
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 6.1e-48 196.4 228 52.6
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 6.1e-48 196.4 195 59.0
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 8.0e-48 196.1 231 52.4
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.0e-47 195.7 231 52.4
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.0e-47 195.7 172 62.2
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.4e-47 195.3 192 59.4
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.4e-47 195.3 167 62.9
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 1.4e-47 195.3 167 62.9
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 1.4e-47 195.3 228 51.3
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 8.8e-47 192.6 191 59.2
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 2.2e-45 188.0 180 57.8
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 4.8e-45 186.8 229 50.7
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 8.3e-45 186.0 208 54.3
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 3.1e-44 184.1 163 58.3
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.1e-44 184.1 170 57.6
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 9.1e-44 182.6 171 57.3
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.6e-43 181.8 195 55.4
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.6e-43 181.8 195 54.4
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 7.7e-43 179.5 200 52.5
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.0e-42 179.1 241 50.6
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.0e-42 179.1 200 52.0
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.1e-41 175.6 219 49.8
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 3.3e-41 174.1 238 46.6
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 7.2e-41 172.9 171 55.0
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 2.8e-40 171.0 203 51.7
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 1.4e-36 158.7 95 81.1
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 7.0e-36 156.4 113 67.3
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 3.5e-35 154.1 163 51.5
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.3e-34 152.1 123 57.7
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-34 152.1 184 50.0
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-34 152.1 184 50.0
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 2.9e-34 151.0 122 64.8
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 6.6e-34 149.8 120 61.7
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 1.5e-33 148.7 183 50.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 4.7e-32 143.7 160 46.2
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.5e-27 127.5 214 42.5
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 8.9e-23 112.8 192 40.1
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 3.7e-21 107.5 179 41.9
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 3.3e-17 94.4 154 38.3
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 7.3e-17 93.2 61 72.1
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.2e-14 85.9 52 80.8
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.5e-14 85.5 77 85.7
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 1.3e-13 82.4 139 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.2e-13 81.6 181 34.8
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 2.1e-11 75.1 72 59.7
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.1e-11 75.1 158 37.3
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 4.7e-08 63.9 65 49.2
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 3.1e-07 61.2 70 77.1
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.8e-07 60.1 142 33.8
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 6.8e-07 60.1 142 33.8
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 5.8e-06 57.0 40 72.5


User provided reference genes

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