Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0287851 Helianthus annuus HOM05D004253 ORTHO05D005013 1.6e-103 379.4 191 100.0
HanXRQChr15g0463391 Helianthus annuus HOM05D004253 ORTHO05D005013 2.2e-68 262.7 162 79.6
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 5.1e-65 251.5 162 79.0
FAN05G1507 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.0e-53 213.0 152 67.1
FAN05G3841 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.0e-53 213.0 152 67.1
FvH4_6g10490 Fragaria vesca HOM05D004253 ORTHO05D005013 2.6e-53 212.6 162 64.2
FAN14G5304 Fragaria x ananassa HOM05D004253 ORTHO05D005013 2.6e-53 212.6 162 64.2
FAN09G3783 Fragaria x ananassa HOM05D004253 ORTHO05D005013 5.8e-53 211.5 149 67.1
Atru.chr8.2352 Acer truncatum HOM05D004253 ORTHO05D005013 2.5e-51 206.1 154 64.3
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla HOM05D004253 ORTHO05D005013 2.5e-51 206.1 141 70.2
CiPaw.09G216200 Carya illinoinensis HOM05D004253 ORTHO05D005013 3.2e-51 205.7 148 70.3
Lj3g0027471 Lotus japonicus HOM05D004253 ORTHO05D005013 4.2e-51 205.3 150 68.0
Haze_21100 Corylus avellana HOM05D004253 ORTHO05D005013 7.1e-51 204.5 147 69.4
Gorai.002G200200 Gossypium raimondii HOM05D004253 ORTHO05D005013 7.1e-51 204.5 153 68.0
Gohir.D01G161500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 2.1e-50 203.0 153 67.3
Gohir.A01G170500 Gossypium hirsutum HOM05D004253 ORTHO05D005013 2.7e-50 202.6 153 67.3
TAR633G0963 Trochodendron aralioides HOM05D004253 ORTHO05D005013 3.5e-50 202.2 171 60.8
MSTRG.18968 Avicennia marina HOM05D004253 ORTHO05D005013 7.9e-50 201.1 162 63.0
Eucgr.A00634 Eucalyptus grandis HOM05D004253 ORTHO05D005013 7.9e-50 201.1 158 63.9
Sabra16G0129900 Salix brachista HOM05D004253 ORTHO05D005013 7.9e-50 201.1 156 62.2
Lj3g0025170 Lotus japonicus HOM05D004253 ORTHO05D005013 1.8e-49 199.9 162 62.3
CSS0015068 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 2.3e-49 199.5 154 63.6
CSS0016892 Camellia sinensis var. sinensis HOM05D004253 ORTHO05D005013 3.0e-49 199.1 139 69.8
Cfa017100 Carpinus fangiana HOM05D004253 ORTHO05D005013 3.0e-49 199.1 147 66.7
Thecc.05G005300 Theobroma cacao HOM05D004253 ORTHO05D005013 3.0e-49 199.1 140 67.9
AT5G03570 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 3.9e-49 198.7 141 67.4
RcHm_v2.0_Chr6g0247161 Rosa chinensis HOM05D004253 ORTHO05D005013 5.1e-49 198.4 165 57.0
AL6G13070 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 6.7e-49 198.0 148 64.9
Carub.0006s0241 Capsella rubella HOM05D004253 ORTHO05D005013 6.7e-49 198.0 148 64.9
Thhalv10013299m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 6.7e-49 198.0 141 66.7
Nn2g13286 Nelumbo nucifera HOM05D004253 ORTHO05D005013 6.7e-49 198.0 154 64.9
Nitab4.5_0012987g0010 Nicotiana tabacum HOM05D004253 ORTHO05D005013 8.7e-49 197.6 140 70.0
PSO349G0244 Papaver somniferum HOM05D004253 ORTHO05D005013 8.7e-49 197.6 140 68.6
C03p01610 Brassica napus HOM05D004253 ORTHO05D005013 1.1e-48 197.2 163 60.1
BolC3t12713H Brassica oleracea HOM05D004253 ORTHO05D005013 1.1e-48 197.2 149 63.8
Manes.09G113000 Manihot esculenta HOM05D004253 ORTHO05D005013 1.1e-48 197.2 140 65.0
Potri.016G128600 Populus trichocarpa HOM05D004253 ORTHO05D005013 1.1e-48 197.2 162 60.5
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea HOM05D004253 ORTHO05D005013 1.5e-48 196.8 163 59.5
A03p01250 Brassica napus HOM05D004253 ORTHO05D005013 1.5e-48 196.8 163 60.1
BraA03t09505Z Brassica rapa HOM05D004253 ORTHO05D005013 1.5e-48 196.8 163 60.1
FAN02G2747 Fragaria x ananassa HOM05D004253 ORTHO05D005013 1.5e-48 196.8 150 64.7
GSVIVG01030252001 Vitis vinifera HOM05D004253 ORTHO05D005013 1.5e-48 196.8 141 66.0
Thecc.05G005200 Theobroma cacao HOM05D004253 ORTHO05D005013 1.9e-48 196.4 140 67.1
BcaB01g05801 Brassica carinata HOM05D004253 ORTHO05D005013 3.3e-48 195.7 163 59.5
Prupe.6G286200 Prunus persica HOM05D004253 ORTHO05D005013 3.3e-48 195.7 176 55.7
Ciclev10011564m.g Citrus clementina HOM05D004253 ORTHO05D005013 5.7e-48 194.9 154 62.3
MD12G1181400 Malus domestica HOM05D004253 ORTHO05D005013 5.7e-48 194.9 179 57.5
Duzib093G0769 Durio zibethinus HOM05D004253 ORTHO05D005013 7.4e-48 194.5 157 61.1
Migut.J00086 Erythranthe guttata HOM05D004253 ORTHO05D005013 7.4e-48 194.5 175 57.7
QL07p033645 Quercus lobata HOM05D004253 ORTHO05D005013 7.4e-48 194.5 162 59.9
Sp6g39180 Schrenkiella parvula HOM05D004253 ORTHO05D005013 7.4e-48 194.5 167 58.1
Nitab4.5_0000355g0170 Nicotiana tabacum HOM05D004253 ORTHO05D005013 9.6e-48 194.1 140 67.1
GSVIVG01030250001 Vitis vinifera HOM05D004253 ORTHO05D005013 9.6e-48 194.1 133 69.2
Sed0018512 Sechium edule HOM05D004253 ORTHO05D005013 1.3e-47 193.7 155 63.9
Eucgr.A00629 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.6e-47 193.4 144 64.6
Solyc10g076280.3 Solanum lycopersicum HOM05D004253 ORTHO05D005013 1.6e-47 193.4 140 66.4
Sopen10g027900 Solanum pennellii HOM05D004253 ORTHO05D005013 1.6e-47 193.4 140 66.4
COL.COLO4_14437 Corchorus olitorius HOM05D004253 ORTHO05D005013 2.1e-47 193.0 141 68.1
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 2.8e-47 192.6 157 63.7
Rhsim05G0226800 Rhododendron simsii HOM05D004253 ORTHO05D005013 3.7e-47 192.2 181 56.4
PGSC0003DMG400011865 Solanum tuberosum HOM05D004253 ORTHO05D005013 3.7e-47 192.2 140 65.7
vmacro20334 Vaccinium macrocarpon HOM05D004253 ORTHO05D005013 3.7e-47 192.2 150 64.7
Psat7g249920 Pisum sativum HOM05D004253 ORTHO05D005013 4.8e-47 191.8 139 64.7
BcaB01g05813 Brassica carinata HOM05D004253 ORTHO05D005013 6.3e-47 191.4 168 58.3
COL.COLO4_17446 Corchorus olitorius HOM05D004253 ORTHO05D005013 6.3e-47 191.4 159 59.7
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea HOM05D004253 ORTHO05D005013 8.2e-47 191.0 163 58.3
Phvul.010G062200 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.1e-46 190.7 162 59.3
CARHR209750 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.4e-46 190.3 166 58.4
DCAR_023991 Daucus carota HOM05D004253 ORTHO05D005013 1.4e-46 190.3 160 59.4
TWI53G0484 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 1.8e-46 189.9 140 63.6
Lalb_Chr13g0291391 Lupinus albus HOM05D004253 ORTHO05D005013 3.1e-46 189.1 162 57.4
Oeu026968.1 Olea europaea HOM05D004253 ORTHO05D005013 3.1e-46 189.1 140 62.1
CAN.G955.1 Capsicum annuum HOM05D004253 ORTHO05D005013 6.9e-46 188.0 140 65.0
TPR.G5208 Trifolium pratense HOM05D004253 ORTHO05D005013 6.9e-46 188.0 139 64.0
CANSAT35G1695 Cannabis sativa HOM05D004253 ORTHO05D005013 1.2e-45 187.2 163 59.5
Cc06_g00690 Coffea canephora HOM05D004253 ORTHO05D005013 1.5e-45 186.8 140 65.7
Medtr4g013240 Medicago truncatula HOM05D004253 ORTHO05D005013 1.5e-45 186.8 133 67.7
Aqoxy4G02184 Aquilegia oxysepala HOM05D004253 ORTHO05D005013 4.5e-45 185.3 143 60.1
CsaV3_4G026660 Cucumis sativus L. HOM05D004253 ORTHO05D005013 4.5e-45 185.3 157 60.5
VMungo0331G0711 Vigna mungo HOM05D004253 ORTHO05D005013 4.5e-45 185.3 139 61.9
Duzib177G0173 Durio zibethinus HOM05D004253 ORTHO05D005013 5.9e-45 184.9 140 62.9
Eucgr.A00632 Eucalyptus grandis HOM05D004253 ORTHO05D005013 7.6e-45 184.5 144 61.8
Sed0023395 Sechium edule HOM05D004253 ORTHO05D005013 7.6e-45 184.5 141 63.1
AT2G38460 Arabidopsis thaliana HOM05D004253 ORTHO05D005013 1.7e-44 183.3 136 62.5
Aa31sc114G20 Aethionema arabicum HOM05D004253 ORTHO05D005013 2.2e-44 183.0 151 60.3
BcaC02g11997 Brassica carinata HOM05D004253 ORTHO05D005013 2.2e-44 183.0 136 63.2
BolC4t22497H Brassica oleracea HOM05D004253 ORTHO05D005013 2.2e-44 183.0 136 63.2
A05p07590 Brassica napus HOM05D004253 ORTHO05D005013 2.9e-44 182.6 136 62.5
Manes.09G113100 Manihot esculenta HOM05D004253 ORTHO05D005013 5.0e-44 181.8 168 54.2
Carub.0004s2043 Capsella rubella HOM05D004253 ORTHO05D005013 8.5e-44 181.0 147 59.2
CARHR133140 Cardamine hirsuta HOM05D004253 ORTHO05D005013 1.9e-43 179.9 147 57.1
Thhalv10016525m.g Eutrema salsugineum HOM05D004253 ORTHO05D005013 1.9e-43 179.9 171 53.2
Lj3g0011406 Lotus japonicus HOM05D004253 ORTHO05D005013 1.9e-43 179.9 155 58.1
Sp4g20780 Schrenkiella parvula HOM05D004253 ORTHO05D005013 1.9e-43 179.9 136 61.0
unitig_8.g4466 Utricularia gibba HOM05D004253 ORTHO05D005013 1.9e-43 179.9 139 61.2
AL4G35730 Arabidopsis lyrata HOM05D004253 ORTHO05D005013 2.5e-43 179.5 136 61.8
C04p09070 Brassica napus HOM05D004253 ORTHO05D005013 2.5e-43 179.5 136 62.5
C04p09080 Brassica napus HOM05D004253 ORTHO05D005013 2.5e-43 179.5 168 54.2
AUR62006302 Chenopodium quinoa HOM05D004253 ORTHO05D005013 2.5e-43 179.5 149 60.4
VMungo0331G0982 Vigna mungo HOM05D004253 ORTHO05D005013 2.5e-43 179.5 144 59.7
Nn5g27904 Nelumbo nucifera HOM05D004253 ORTHO05D005013 3.2e-43 179.1 138 63.0
AUR62026347 Chenopodium quinoa HOM05D004253 ORTHO05D005013 7.2e-43 177.9 149 60.4
PSO017G1341 Papaver somniferum HOM05D004253 ORTHO05D005013 1.6e-42 176.8 155 57.4
Hund19850 Selenicereus undatus HOM05D004253 ORTHO05D005013 1.6e-42 176.8 157 59.2
Zm00001eb384340 Zea mays HOM05D004253 ORTHO05D005013 1.6e-42 176.8 138 63.0
Sc02g0000650 Simmondsia chinensis HOM05D004253 ORTHO05D005013 2.1e-42 176.4 167 56.9
THA.LOC104806636 Tarenaya hassleriana HOM05D004253 ORTHO05D005013 3.6e-42 175.6 153 57.5
BcaB02g09172 Brassica carinata HOM05D004253 ORTHO05D005013 6.1e-42 174.9 136 61.8
Eucgr.A00635 Eucalyptus grandis HOM05D004253 ORTHO05D005013 1.8e-41 173.3 140 60.7
HPP92_012007 Vanilla planifolia HOM05D004253 ORTHO05D005013 1.8e-41 173.3 144 56.9
RcHm_v2.0_Chr3g0461451 Rosa chinensis HOM05D004253 ORTHO05D005013 3.9e-41 172.2 119 68.1
ClCG04G006590 Citrullus lanatus HOM05D004253 ORTHO05D005013 1.9e-40 169.9 143 60.8
HPP92_012012 Vanilla planifolia HOM05D004253 ORTHO05D005013 1.9e-40 169.9 144 55.6
Potri.016G128500 Populus trichocarpa HOM05D004253 ORTHO05D005013 2.5e-40 169.5 121 66.9
Lj3C944T3 Lonicera japonica HOM05D004253 ORTHO05D005013 2.2e-39 166.4 119 68.1
Peaxi162Scf00264g00861 Petunia axillaris HOM05D004253 ORTHO05D005013 2.2e-39 166.4 124 66.1
Ca_27544_v3 Cicer arietinum L. HOM05D004253 ORTHO05D005013 2.8e-39 166.0 119 67.2
Eucgr.A00630 Eucalyptus grandis HOM05D004253 ORTHO05D005013 6.3e-39 164.9 155 56.8
Medtr4g013245 Medicago truncatula HOM05D004253 ORTHO05D005013 8.2e-39 164.5 119 67.2
PGR031G1936 Punica granatum HOM05D004253 ORTHO05D005013 1.8e-38 163.3 121 67.8
Os06g0560000 Oryza sativa ssp. japonica HOM05D004253 ORTHO05D005013 2.4e-38 162.9 139 59.0
SGA_v2.0_scaffold85G26671 Striga asiatica HOM05D004253 ORTHO05D005013 7.7e-37 157.9 121 62.8
BraA05t19726Z Brassica rapa HOM05D004253 ORTHO05D005013 1.0e-36 157.5 121 62.0
SalBow5G5570 Salvia bowleyana HOM05D004253 ORTHO05D005013 1.7e-36 156.8 119 63.9
Glyma.03G042400 Glycine max HOM05D004253 ORTHO05D005013 2.2e-36 156.4 119 62.2
Glyma.01G128300 Glycine max HOM05D004253 ORTHO05D005013 1.6e-34 150.2 119 59.7
SEGI_29225 Sequoiadendron giganteum HOM05D004253 ORTHO05D005013 4.6e-34 148.7 141 52.5
EL10Ac7g17016 Beta vulgaris HOM05D004253 ORTHO05D005013 6.1e-34 148.3 119 63.9
PSO349G0271 Papaver somniferum HOM05D004253 ORTHO05D005013 1.0e-33 147.5 119 58.0
CDE04G3038 Ceratophyllum demersum HOM05D004253 ORTHO05D005013 2.3e-33 146.4 119 63.9
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 5.1e-33 145.2 119 59.7
Phvul.010G062300 Phaseolus vulgaris HOM05D004253 ORTHO05D005013 1.5e-32 143.7 119 58.0
TWI74G0689 Tripterygium wilfordii HOM05D004253 ORTHO05D005013 2.0e-32 143.3 111 64.0
Mapoly0049s0027 Marchantia polymorpha HOM05D004253 ORTHO05D005013 4.8e-31 138.7 141 51.1
Cc00_g33920 Coffea canephora HOM05D004253 ORTHO05D005013 1.4e-30 137.1 111 62.2
RcHm_v2.0_Chr3g0461431 Rosa chinensis HOM05D004253 ORTHO05D005013 5.5e-27 125.2 96 61.5
Pp3c20_5190 Physcomitrium patens HOM05D004253 ORTHO05D005013 1.1e-24 117.5 133 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis HOM05D004253 ORTHO05D005013 4.4e-24 115.5 137 41.6
MELO3C026034.2 Cucumis melo HOM05D004253 ORTHO05D005013 1.3e-23 114.0 119 53.8
Aa31LG1G21620 Aethionema arabicum HOM05D004253 ORTHO05D005013 1.2e-21 107.5 102 53.9
CBR_g42062 Chara braunii HOM05D004253 ORTHO05D005013 1.0e-20 104.4 133 41.4
RcHm_v2.0_Chr3g0461441 Rosa chinensis HOM05D004253 ORTHO05D005013 4.7e-18 95.5 73 63.0
Zm00001eb384360 Zea mays HOM05D004253 ORTHO05D005013 6.1e-18 95.1 133 42.9
SMO115G0243 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 4.0e-17 92.4 138 37.7
CiPaw.09G216400 Carya illinoinensis HOM05D004253 ORTHO05D005013 4.8e-15 85.5 71 64.8
SMO118G0042 Selaginella moellendorffii HOM05D004253 ORTHO05D005013 1.9e-11 73.6 151 31.8
Cpa.g.sc5.254 Carica papaya HOM05D004253 ORTHO05D005013 1.2e-10 70.9 41 70.7
Actinidia29061 Actinidia chinensis HOM05D004253 ORTHO05D005013 3.0e-09 66.2 57 63.2


User provided reference genes

Program Settings