Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 2.9e-271 937.9 467 100.0
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.0e-180 635.2 492 69.3
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.6e-179 632.5 475 68.0
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.1e-164 582.4 476 67.9
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 3.7e-133 479.2 474 56.3
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-126 457.6 465 55.5
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 3.3e-126 456.1 463 53.6
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.7e-125 453.8 472 54.9
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.8e-125 453.0 428 57.0
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.8e-124 450.3 468 54.3
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.6e-123 446.4 470 54.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.9e-123 445.3 474 55.3
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.3e-122 444.1 470 53.2
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.8e-122 442.6 470 53.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 6.5e-122 441.8 472 53.6
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.4e-121 438.0 472 54.2
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 9.4e-121 438.0 472 54.2
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.6e-120 436.0 469 53.9
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.0e-119 433.0 471 51.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.7e-119 431.8 469 51.8
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 9.7e-118 427.9 469 53.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.3e-117 427.6 489 50.1
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.7e-117 427.2 478 51.7
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.2e-117 424.9 468 51.9
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.1e-116 422.9 469 50.7
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 5.3e-116 422.2 474 51.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 7.0e-116 421.8 461 52.7
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.5e-115 420.6 473 52.2
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 2.0e-115 420.2 471 51.8
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.2e-114 416.8 469 51.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 5.0e-114 415.6 483 50.9
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.5e-113 414.1 471 51.2
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 5.5e-113 412.1 473 51.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 7.2e-113 411.8 465 49.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-112 410.6 444 52.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.1e-112 410.2 433 52.9
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 3.0e-111 406.4 439 53.8
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 8.8e-111 404.8 468 50.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 8.8e-111 404.8 437 51.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 4.4e-110 402.5 489 50.1
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.3e-109 401.0 470 51.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.7e-109 399.4 431 54.5
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.7e-109 399.4 476 49.6
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.8e-108 397.1 474 49.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.3e-108 395.6 490 49.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 9.1e-108 394.8 490 49.0
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.0e-106 391.3 503 49.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.3e-106 391.0 441 53.3
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.2e-106 390.2 476 50.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 2.9e-106 389.8 437 52.4
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.5e-106 388.7 488 49.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.5e-106 388.7 488 49.4
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.5e-106 388.7 487 48.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.2e-105 386.3 488 47.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.2e-105 386.0 466 48.3
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.6e-104 382.9 416 50.0
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 4.7e-104 382.5 470 50.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.1e-104 382.1 416 49.8
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 8.0e-104 381.7 483 48.0
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.4e-103 380.9 416 49.8
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.8e-103 378.3 472 47.7
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 7.5e-102 375.2 474 47.7
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 9.8e-102 374.8 470 49.1
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 9.8e-102 374.8 488 45.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.2e-101 373.6 485 46.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.8e-101 373.2 411 53.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 4.8e-101 372.5 386 53.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 4.8e-101 372.5 477 47.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-100 371.3 510 45.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 3.1e-100 369.8 505 45.1
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 5.4e-100 369.0 461 49.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.5e-99 365.9 481 46.6
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.3e-98 364.4 477 46.5
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.6e-96 356.3 460 45.4
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 4.7e-96 355.9 475 46.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 8.0e-96 355.1 474 46.8
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.0e-95 353.2 455 43.5
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.0e-95 353.2 478 47.5
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 4.0e-95 352.8 481 44.7
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.8e-95 352.1 480 45.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.6e-94 350.1 485 46.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 4.4e-94 349.4 474 45.1
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.7e-94 349.0 479 43.0
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 9.8e-94 348.2 473 47.4
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.7e-93 347.4 468 47.2
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.7e-93 347.4 467 45.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 4.1e-92 342.8 472 44.9
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 7.0e-92 342.0 474 45.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.0e-91 340.5 492 44.1
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 7.2e-89 332.0 472 42.8
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 9.5e-89 331.6 395 48.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-88 330.9 405 47.7
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.0e-87 328.2 488 43.6
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.0e-87 328.2 383 52.2
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 5.2e-87 325.9 461 45.3
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.2e-86 324.7 446 44.4
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 4.4e-86 322.8 429 46.4
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 4.4e-86 322.8 484 41.5
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.9e-85 319.3 428 44.6
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 8.3e-85 318.5 404 47.3
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.6e-83 314.3 461 41.9
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.9e-82 310.1 486 41.4
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.1e-81 308.1 352 50.9
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.5e-81 307.8 424 44.3
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 9.5e-81 305.1 339 51.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.3e-77 294.7 463 42.5
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.9e-77 293.5 457 40.3
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 6.4e-77 292.4 488 38.9
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 4.6e-75 286.2 487 41.5
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.0e-74 285.0 469 42.6
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.3e-74 284.6 345 44.6
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 8.6e-74 282.0 485 40.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.5e-73 281.2 488 41.0
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.3e-73 278.9 402 43.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 8.3e-69 265.4 199 64.8
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 9.2e-68 261.9 294 51.7
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.1e-67 260.8 477 39.0
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.7e-67 260.4 476 38.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.0e-66 256.9 441 40.6
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.5e-65 254.6 441 39.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 3.3e-65 253.4 199 63.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 9.5e-65 251.9 398 42.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.6e-64 250.0 473 37.8
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.0e-63 246.5 470 37.7
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.0e-62 244.2 203 61.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.4e-62 243.0 398 39.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 9.9e-62 241.9 234 54.3
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 8.4e-61 238.8 463 34.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.5e-59 233.4 415 37.3
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.1e-51 207.6 491 32.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-50 204.5 497 33.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-49 200.7 500 33.0
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 3.6e-48 196.8 422 33.4
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 9.0e-47 192.2 465 33.8
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 3.8e-45 186.8 440 32.0
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 6.0e-43 179.5 157 54.8
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.0e-42 178.7 408 34.3
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.6e-41 172.9 463 32.8
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 9.0e-39 165.6 154 54.5
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 9.0e-39 165.6 154 54.5
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.0e-34 150.6 167 48.5
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.9e-34 150.2 166 48.2
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.9e-34 150.2 331 36.6
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.9e-34 150.2 166 48.2
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.7e-34 149.4 441 31.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-33 148.7 344 36.3
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.8e-31 141.4 326 38.3
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 6.9e-31 139.4 163 43.6
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.9e-29 134.0 391 28.6
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.9e-28 131.3 317 36.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.2e-28 130.6 142 50.0
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 8.7e-26 122.5 109 52.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 4.8e-16 90.1 261 29.5
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 5.3e-15 86.7 103 50.5
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.1e-11 74.7 169 33.7
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.0e-10 72.4 127 33.9


User provided reference genes

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