Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 1.7e-260 902.1 452 100.0
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 1.9e-163 579.7 429 72.3
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 3.4e-144 515.8 349 75.4
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 2.3e-132 476.5 435 59.5
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 1.8e-129 466.8 439 57.9
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 4.1e-129 465.7 439 57.6
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 5.9e-128 461.8 433 59.4
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 7.7e-128 461.5 442 55.7
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 1.0e-127 461.1 442 55.9
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 1.0e-127 461.1 435 58.6
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 1.0e-127 461.1 441 56.7
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 8.5e-127 458.0 433 57.0
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 1.9e-126 456.8 439 56.7
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 3.2e-126 456.1 440 55.9
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 7.2e-126 454.9 441 56.0
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 2.7e-125 453.0 438 55.9
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 3.6e-125 452.6 437 56.1
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 6.1e-125 451.8 435 57.2
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 3.0e-124 449.5 436 56.0
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 3.0e-124 449.5 452 53.8
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 5.1e-124 448.7 439 54.7
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 5.1e-124 448.7 445 54.8
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 1.5e-123 447.2 439 54.2
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 1.5e-123 447.2 431 56.1
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 2.6e-123 446.4 432 56.0
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 2.6e-123 446.4 433 55.4
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 7.4e-123 444.9 432 56.5
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 7.4e-123 444.9 437 54.9
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 3.7e-122 442.6 443 54.2
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 3.7e-122 442.6 439 54.2
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 3.7e-122 442.6 418 57.7
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 6.3e-122 441.8 444 55.0
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 5.3e-121 438.7 454 53.5
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 2.6e-120 436.4 425 55.5
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 4.5e-120 435.6 441 54.4
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 3.8e-119 432.6 439 56.0
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 5.0e-119 432.2 446 53.8
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 1.4e-118 430.6 434 53.5
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 4.2e-118 429.1 438 53.9
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 5.5e-118 428.7 435 54.0
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 9.4e-118 427.9 431 55.2
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 6.1e-117 425.2 444 54.3
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 6.1e-117 425.2 440 53.4
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 6.7e-116 421.8 464 52.4
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 1.1e-115 421.0 444 52.7
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 3.7e-114 416.0 451 53.0
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 1.8e-113 413.7 456 51.3
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 5.3e-113 412.1 448 51.6
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 9.1e-113 411.4 395 57.0
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 3.5e-112 409.5 451 51.0
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 2.9e-111 406.4 451 49.7
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 7.2e-110 401.7 493 50.1
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 4.7e-109 399.1 434 51.6
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 1.8e-108 397.1 452 50.7
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 1.8e-108 397.1 449 50.6
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 8.8e-108 394.8 389 56.3
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 2.6e-107 393.3 431 51.0
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 3.3e-107 392.9 462 50.4
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 4.4e-107 392.5 463 48.8
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 4.8e-106 389.0 442 50.2
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 2.0e-104 383.6 432 49.8
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 2.0e-104 383.6 432 49.8
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 7.7e-104 381.7 443 49.9
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 3.8e-103 379.4 433 49.0
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 2.5e-102 376.7 443 49.2
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 2.5e-102 376.7 443 49.2
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 9.4e-102 374.8 462 48.1
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.1e-101 373.6 431 49.0
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 2.7e-101 373.2 423 51.5
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 8.0e-101 371.7 432 48.6
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 2.3e-100 370.2 493 43.4
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 2.0e-99 367.1 363 56.7
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 2.8e-98 363.2 361 56.5
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 1.4e-97 360.9 361 55.7
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 4.1e-97 359.4 364 55.5
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 5.4e-97 359.0 384 52.3
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 7.0e-97 358.6 362 54.4
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 1.2e-96 357.8 359 55.4
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 2.7e-96 356.7 432 46.8
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 2.7e-96 356.7 483 44.5
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 3.5e-96 356.3 432 46.8
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 4.5e-88 329.3 352 52.8
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 3.3e-86 323.2 440 43.2
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 2.3e-84 317.0 374 48.4
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 1.2e-83 314.7 370 48.4
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 1.1e-78 298.1 431 43.2
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 6.0e-72 275.8 536 36.4
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 3.9e-71 273.1 351 46.2
QL10p037675 Quercus lobata HOM05D007044 ORTHO05D008981 5.6e-70 269.2 299 52.8
Eucgr.I00024 Eucalyptus grandis HOM05D007044 ORTHO05D008981 3.1e-68 263.5 309 49.5
Glyma.10G176100 Glycine max HOM05D007044 ORTHO05D008981 1.6e-61 241.1 279 50.2
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 4.7e-61 239.6 682 28.3
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 1.0e-55 221.9 371 39.6
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.2e-51 208.4 288 44.4
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 6.6e-47 192.6 144 65.3
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 9.6e-46 188.7 142 62.0
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 4.5e-43 179.9 147 61.9
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 7.1e-41 172.6 143 60.8
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 1.1e-38 165.2 233 44.2
MELO3C033209.2 Cucumis melo HOM05D007044 ORTHO05D008981 2.5e-33 147.5 159 54.1
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 1.1e-25 122.1 307 30.3
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 7.9e-24 115.9 266 30.1
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 1.5e-22 111.7 227 31.3
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 8.2e-21 105.9 322 27.3
CBR_g30110 Chara braunii HOM05D007044 ORTHO05D008981 1.8e-20 104.8 270 31.1
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 5.3e-20 103.2 209 34.9
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 5.5e-17 93.2 130 46.2
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 4.6e-16 90.1 151 35.1
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 1.4e-15 88.6 218 34.4
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 1.7e-13 81.6 241 27.8
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 2.2e-13 81.3 408 22.3
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 1.4e-12 78.6 247 27.1
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.6e-11 74.3 61 59.0
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 8.5e-10 69.3 131 34.4
Aa31LG10G10060 Aethionema arabicum HOM05D005234 ORTHO05D006583 1.4e-09 68.6 236 22.5
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.4e-09 68.6 131 33.6
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.9e-09 68.2 131 33.6
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 5.5e-09 66.6 245 27.8
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 5.5e-09 66.6 281 23.1
Mapoly0065s0091 Marchantia polymorpha HOM05D005456 ORTHO05D006805 7.2e-09 66.2 428 23.4
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 9.4e-09 65.9 241 26.6
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 1.2e-08 65.5 146 32.2
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 1.2e-08 65.5 250 23.2
HanXRQChr02g0048161 Helianthus annuus HOM05D007044 ORTHO05D008981 2.1e-08 64.7 30 90.0
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 2.7e-08 64.3 240 27.1
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 2.7e-08 64.3 246 26.0
Pp3c19_10210 Physcomitrium patens HOM05D005234 ORTHO05D006583 2.7e-08 64.3 241 22.0
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 6.1e-08 63.2 257 22.6
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 1.0e-07 62.4 131 29.8
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 1.0e-07 62.4 257 22.6
MD16G1067900 Malus domestica HOM05D005456 ORTHO05D006805 1.0e-07 62.4 127 33.9
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 1.4e-07 62.0 257 23.0
Nitab4.5_0000271g0220 Nicotiana tabacum HOM05D005234 ORTHO05D006583 1.4e-07 62.0 249 22.9
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 1.4e-07 62.0 236 24.2
TPR.G10401 Trifolium pratense HOM05D005234 ORTHO05D006583 1.4e-07 62.0 236 25.4
C08p30350 Brassica napus HOM05D005234 ORTHO05D006583 1.8e-07 61.6 257 23.0
Psat6g238640 Pisum sativum HOM05D005234 ORTHO05D006583 1.8e-07 61.6 245 24.5
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 2.3e-07 61.2 245 23.7
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 2.3e-07 61.2 246 26.0
MCO16G629 Micromonas commoda HOM05D005416 ORTHO05D016538 2.3e-07 61.2 275 24.0
FAN22G2029 Fragaria x ananassa HOM05D005456 ORTHO05D006805 3.0e-07 60.8 127 30.7
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 3.9e-07 60.5 256 22.3
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 3.9e-07 60.5 303 24.4
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 3.9e-07 60.5 257 23.7
Actinidia16039 Actinidia chinensis HOM05D007044 ORTHO05D008981 5.1e-07 60.1 122 41.0
FAN12G1233 Fragaria x ananassa HOM05D005456 ORTHO05D006805 5.1e-07 60.1 127 30.7
A09p48110 Brassica napus HOM05D005234 ORTHO05D006583 6.7e-07 59.7 257 22.6
BolC8t50657H Brassica oleracea HOM05D005234 ORTHO05D006583 6.7e-07 59.7 257 22.6
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 6.7e-07 59.7 346 24.9
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 6.7e-07 59.7 241 24.5
Prupe.1G278900 Prunus persica HOM05D005456 ORTHO05D006805 6.7e-07 59.7 130 33.1
QL03p069503 Quercus lobata HOM05D005456 ORTHO05D006805 6.7e-07 59.7 130 31.5
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 1.1e-06 58.9 125 32.0
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 1.1e-06 58.9 254 26.4
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 1.5e-06 58.5 128 29.7
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 1.5e-06 58.5 236 24.2
FAN07G2817 Fragaria x ananassa HOM05D005456 ORTHO05D006805 1.5e-06 58.5 127 30.7
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 1.5e-06 58.5 294 23.1
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 1.5e-06 58.5 271 22.9
Sp5g07340 Schrenkiella parvula HOM05D005234 ORTHO05D006583 1.5e-06 58.5 257 22.2
Cfa008936 Carpinus fangiana HOM05D005456 ORTHO05D006805 2.0e-06 58.2 126 32.5
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 2.6e-06 57.8 303 24.4
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 2.6e-06 57.8 249 27.3
Cc11_g12670 Coffea canephora HOM05D005456 ORTHO05D006805 2.6e-06 57.8 125 32.8
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 2.6e-06 57.8 243 24.3
VMungo0251G2245 Vigna mungo HOM05D005456 ORTHO05D006805 3.3e-06 57.4 243 24.3
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 3.3e-06 57.4 245 23.3
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 4.4e-06 57.0 239 20.1
Zm00001eb347700 Zea mays HOM05D001443 ORTHO05D001352 4.4e-06 57.0 49 57.1
FAN17G1535 Fragaria x ananassa HOM05D005456 ORTHO05D006805 5.7e-06 56.6 127 29.9
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 5.7e-06 56.6 246 25.2
Thhalv10010346m.g Eutrema salsugineum HOM05D005234 ORTHO05D006583 7.4e-06 56.2 257 21.0
Hund25214 Selenicereus undatus HOM05D005456 ORTHO05D006805 7.4e-06 56.2 133 30.8


User provided reference genes

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