Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 8.9e-33 142.9 67 100.0
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.4e-30 135.6 67 94.0
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.9e-23 110.5 61 82.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 2.4e-22 108.2 69 75.4
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 3.2e-22 107.8 66 78.8
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.6e-21 105.5 61 77.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.1e-21 105.1 61 78.7
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.7e-21 104.8 60 78.3
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 6.0e-21 103.6 62 75.8
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 7.9e-21 103.2 66 72.7
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.0e-20 102.8 62 74.2
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.0e-20 102.8 69 71.0
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.3e-20 102.4 66 74.2
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.8e-20 102.1 69 71.0
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.3e-20 101.7 69 69.6
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.3e-20 101.7 71 73.2
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.3e-20 101.7 68 72.1
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.0e-20 101.3 62 75.8
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 3.9e-20 100.9 61 75.4
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.9e-20 100.9 62 77.4
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 5.1e-20 100.5 68 69.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.1e-20 100.5 65 72.3
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.5e-19 99.0 64 70.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 1.5e-19 99.0 66 71.2
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.5e-19 99.0 65 69.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.9e-19 98.6 74 66.2
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.9e-19 98.6 60 75.0
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.5e-19 98.2 57 77.2
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.5e-19 98.2 57 77.2
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.5e-19 98.2 62 72.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.5e-19 98.2 62 72.6
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.5e-19 98.2 62 72.6
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.3e-19 97.8 59 74.6
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 3.3e-19 97.8 59 74.6
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 3.3e-19 97.8 59 74.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 3.3e-19 97.8 67 71.6
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 4.3e-19 97.4 69 68.1
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.3e-19 97.4 66 66.7
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 7.4e-19 96.7 66 71.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.6e-18 95.5 60 70.0
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 2.1e-18 95.1 59 74.6
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 2.8e-18 94.7 64 70.3
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.6e-18 94.4 57 73.7
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.8e-18 94.0 61 73.8
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.2e-18 93.6 66 66.7
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 8.1e-18 93.2 60 70.0
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.1e-17 92.8 65 66.2
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.8e-17 92.0 57 73.7
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 2.4e-17 91.7 59 67.8
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.4e-17 91.7 53 77.4
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.0e-17 90.9 66 63.6
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 4.0e-17 90.9 63 65.1
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 4.0e-17 90.9 58 69.0
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 5.3e-17 90.5 58 67.2
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 6.9e-17 90.1 57 70.2
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 6.9e-17 90.1 57 70.2
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.6e-16 88.2 59 71.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 5.8e-16 87.0 54 74.1
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 5.8e-16 87.0 55 70.9
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 5.8e-16 87.0 66 62.1
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 7.6e-16 86.7 46 84.8
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 9.9e-16 86.3 62 66.1
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 9.9e-16 86.3 62 66.1
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 9.9e-16 86.3 62 66.1
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 9.9e-16 86.3 59 66.1
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 9.9e-16 86.3 66 62.1
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.7e-15 85.5 62 64.5
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.2e-15 85.1 62 66.1
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 2.9e-15 84.7 62 64.5
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.9e-15 84.7 69 60.9
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 3.8e-15 84.3 66 63.6
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 64.5
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 64.5
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 64.5
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 64.5
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 64.5
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.8e-15 84.3 62 62.9
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.8e-15 84.3 53 71.7
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 3.8e-15 84.3 64 60.9
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.8e-15 84.3 55 72.7
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 6.4e-15 83.6 62 64.5
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 6.4e-15 83.6 62 64.5
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 6.4e-15 83.6 62 64.5
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 6.4e-15 83.6 62 64.5
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 6.4e-15 83.6 62 64.5
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 8.4e-15 83.2 69 59.4
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.4e-15 83.2 53 71.7
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 8.4e-15 83.2 57 63.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 8.4e-15 83.2 59 67.8
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.1e-14 82.8 62 62.9
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-14 82.8 62 62.9
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-14 82.8 62 62.9
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.1e-14 82.8 54 70.4
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-14 82.4 62 62.9
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.9e-14 82.0 60 63.3
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.9e-14 82.0 69 55.1
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 3.2e-14 81.3 59 62.7
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.2e-14 81.3 59 64.4
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 4.2e-14 80.9 53 67.9
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 7.1e-14 80.1 54 66.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 9.3e-14 79.7 62 59.7
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.2e-13 79.3 52 71.2
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.1e-13 78.6 63 61.9
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.1e-13 78.6 55 63.6
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 2.1e-13 78.6 55 63.6
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.5e-13 77.8 47 74.5
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.6e-13 77.4 55 65.5
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.6e-13 77.4 55 65.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 8.7e-12 73.2 46 69.6
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.1e-11 72.8 60 53.3
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 4.3e-11 70.9 46 69.6
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 5.6e-11 70.5 52 63.5
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 7.4e-11 70.1 45 64.4
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.6e-10 68.9 54 57.4
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.6e-10 68.9 62 56.5
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-10 68.9 54 63.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 4.8e-10 67.4 58 58.6
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 4.0e-09 64.3 46 58.7
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.5e-08 62.4 45 57.8
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 3.4e-08 61.2 37 73.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 1.1e-06 56.2 30 80.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 5.5e-06 53.9 62 43.5
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 5.5e-06 53.9 62 43.5


User provided reference genes

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