Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.2e-64 250.0 160 100.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.7e-59 232.3 164 84.8
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 7.3e-57 224.2 163 77.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 4.1e-52 208.4 163 71.2
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 4.6e-51 204.9 160 71.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.6e-51 204.9 160 71.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 4.6e-51 204.9 160 70.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 6.0e-51 204.5 160 68.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 7.8e-51 204.1 160 71.2
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 7.8e-51 204.1 160 70.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.8e-51 204.1 160 71.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 7.8e-51 204.1 160 68.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 7.8e-51 204.1 160 70.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.0e-50 203.8 160 70.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.0e-50 203.8 160 70.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.3e-50 203.4 160 70.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.7e-50 203.0 160 70.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-50 203.0 160 70.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.7e-50 203.0 160 69.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.3e-50 202.6 160 70.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.3e-50 202.6 160 69.4
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.0e-50 202.2 160 70.0
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.6e-50 201.1 160 70.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.6e-50 201.1 160 70.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 8.6e-50 200.7 160 68.8
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.1e-49 200.3 160 68.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.1e-49 200.3 160 69.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.1e-49 200.3 160 70.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.1e-49 200.3 160 70.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.5e-49 199.9 160 68.8
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.9e-49 199.5 160 68.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.9e-49 199.5 162 69.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.5e-49 199.1 160 67.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.5e-49 199.1 160 69.4
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 3.3e-49 198.7 160 69.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.3e-49 198.7 160 68.1
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 4.3e-49 198.4 160 68.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 4.3e-49 198.4 160 67.5
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.3e-49 198.4 160 68.1
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 5.6e-49 198.0 160 69.4
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.3e-49 197.6 160 68.8
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.3e-49 197.6 160 67.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.5e-49 197.2 160 68.1
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.2e-48 196.8 160 69.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-48 196.8 160 68.1
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-48 196.8 160 75.6
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.2e-48 196.8 160 75.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.2e-48 196.8 160 68.8
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.6e-48 196.4 160 69.4
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.6e-48 196.4 160 69.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.6e-48 196.4 160 67.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.8e-48 195.7 160 76.2
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.6e-48 195.3 160 68.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 3.6e-48 195.3 160 71.9
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 6.2e-48 194.5 160 68.8
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 6.2e-48 194.5 160 68.8
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 6.2e-48 194.5 160 68.8
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 6.2e-48 194.5 159 66.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 8.1e-48 194.1 160 82.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 8.1e-48 194.1 160 82.5
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.1e-47 193.7 159 67.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.4e-47 193.4 160 65.6
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.4e-47 193.4 159 66.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.1e-47 192.2 160 78.1
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.1e-47 192.2 160 65.6
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 3.1e-47 192.2 160 66.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 5.2e-47 191.4 160 66.2
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.2e-46 190.3 159 66.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.2e-46 190.3 159 66.7
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-46 190.3 159 66.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-46 189.9 160 66.2
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-46 189.9 160 65.0
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.0e-46 189.5 160 65.0
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.0e-46 189.5 159 66.0
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-46 189.1 160 66.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-46 189.1 160 66.2
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 3.4e-46 188.7 159 66.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.8e-46 188.0 160 65.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.7e-45 186.4 160 66.2
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.2e-45 186.0 176 70.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.9e-45 185.7 161 62.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 3.8e-45 185.3 160 65.0
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 3.8e-45 185.3 160 63.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 3.8e-45 185.3 159 65.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.4e-45 184.5 160 68.1
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.4e-45 184.5 160 63.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.4e-45 184.5 160 63.1
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-44 183.7 159 65.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-44 182.2 156 66.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.2e-44 181.8 160 65.0
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 4.2e-44 181.8 160 65.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.2e-44 181.8 160 63.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.4e-44 181.4 160 65.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.6e-43 179.9 174 59.8
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.6e-43 178.3 168 71.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.6e-43 178.3 160 63.8
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.0e-42 177.2 160 67.5
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-42 177.2 160 61.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-42 176.8 160 63.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-42 176.8 160 62.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-42 176.8 160 64.4
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.6e-42 174.5 160 61.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.6e-42 174.5 194 54.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.1e-41 173.7 160 63.8
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-41 172.9 156 64.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 4.3e-41 171.8 160 61.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.8e-39 166.4 158 60.8
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.4e-38 162.2 158 58.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.4e-38 161.8 137 67.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 5.8e-38 161.4 134 68.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 7.1e-36 154.5 160 54.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-35 153.3 136 64.7
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.6e-35 153.3 160 53.1
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-34 150.2 156 58.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.0e-34 149.1 188 48.9
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.9e-34 148.7 145 61.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 6.6e-34 147.9 147 62.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-33 147.1 134 63.4
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.9e-33 146.4 156 57.7
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.5e-33 146.0 167 65.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 4.3e-33 145.2 134 79.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.0e-31 137.5 160 50.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-30 136.3 130 60.8
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.0e-30 136.3 134 61.2
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.9e-30 134.0 137 56.9
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.8e-29 132.1 117 62.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 8.4e-29 131.0 158 47.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 8.4e-29 131.0 158 58.2
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.6e-27 126.7 81 85.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-26 122.9 80 81.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.1e-26 121.7 80 82.5
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-26 120.9 154 48.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-26 120.9 136 54.4
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.3e-25 119.0 80 80.0
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.6e-25 118.2 76 85.5
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.6e-25 118.2 77 83.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.7e-24 115.5 159 48.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.0e-23 112.1 140 49.3
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 9.0e-23 110.9 69 81.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.6e-22 109.4 157 45.9
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 4.9e-21 105.1 69 79.7
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.9e-20 103.2 106 57.5
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 9.3e-20 100.9 106 56.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.1e-19 99.8 153 42.5
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 9.6e-17 90.9 69 71.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.9e-15 84.7 42 95.2
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 9.0e-15 84.3 99 55.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.0e-14 83.2 57 77.2
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.6e-14 81.3 91 51.6
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 6.5e-13 78.2 106 47.2
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 7.9e-11 71.2 95 46.3
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 3.9e-10 68.9 41 78.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 3.3e-09 65.9 88 44.3
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 3.3e-09 65.9 88 44.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.8e-08 62.8 158 31.0
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 9.0e-07 57.8 37 75.7
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 9.0e-07 57.8 37 75.7
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-06 56.6 48 56.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-06 56.2 50 54.0
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 4.5e-06 55.5 50 54.0


User provided reference genes

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