Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 1.2e-135 486.5 248 100.0
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.7e-132 476.1 248 96.8
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 3.7e-132 474.9 246 96.7
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 2.9e-129 465.3 246 95.5
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 6.5e-129 464.2 246 93.9
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 2.3e-126 455.7 246 92.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.3e-126 455.7 246 92.7
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.3e-126 455.7 246 92.7
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.1e-126 454.5 243 92.6
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 6.7e-126 454.1 244 92.2
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 1.1e-125 453.4 243 93.0
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 2.0e-125 452.6 246 90.7
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 3.3e-125 451.8 246 90.7
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 4.4e-125 451.4 248 90.3
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 1.3e-124 449.9 243 90.9
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 3.7e-124 448.4 243 90.9
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 2.4e-123 445.7 248 90.3
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 2.4e-123 445.7 243 90.9
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 2.4e-123 445.7 246 89.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 3.1e-123 445.3 246 89.8
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 3.1e-123 445.3 243 90.9
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 90.3
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 5.3e-123 444.5 246 89.4
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 5.3e-123 444.5 248 88.7
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.3e-123 444.5 245 90.2
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.3e-123 444.5 245 89.8
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 5.3e-123 444.5 243 90.1
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.5e-122 443.0 243 89.7
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.5e-122 443.0 243 90.5
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.5e-122 443.0 244 90.2
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 244 90.2
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 2.0e-122 442.6 246 89.0
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.0e-122 442.6 243 88.9
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 2.0e-122 442.6 246 89.0
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 243 89.7
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.6e-122 442.2 246 88.6
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 2.6e-122 442.2 247 90.3
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.6e-122 442.2 243 90.5
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.4e-122 441.8 246 87.4
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 4.5e-122 441.4 243 90.1
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 4.5e-122 441.4 243 90.1
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 4.5e-122 441.4 246 89.0
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 4.5e-122 441.4 244 89.8
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 4.5e-122 441.4 243 88.9
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 5.9e-122 441.0 243 89.7
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 7.7e-122 440.7 243 90.1
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.7e-122 440.7 246 87.4
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.0e-121 440.3 244 89.8
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 88.5
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 88.5
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 88.5
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 1.3e-121 439.9 243 88.5
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.3e-121 439.9 246 88.2
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.7e-121 439.5 243 89.3
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.7e-121 439.5 243 89.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 2.9e-121 438.7 243 88.9
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 5.0e-121 438.0 243 88.1
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 5.0e-121 438.0 246 88.2
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 5.0e-121 438.0 246 87.8
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 243 88.9
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-121 437.6 243 88.9
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 6.5e-121 437.6 243 88.9
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 6.5e-121 437.6 243 88.5
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 6.5e-121 437.6 242 89.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 88.2
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 88.2
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 6.5e-121 437.6 246 86.2
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-120 436.8 243 87.7
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.5
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 88.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 88.2
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 1.4e-120 436.4 243 88.9
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.4e-120 436.4 246 87.4
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 1.9e-120 436.0 243 88.1
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 1.9e-120 436.0 243 88.5
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.9e-120 436.0 243 89.7
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.5e-120 435.6 246 88.2
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.2e-120 435.3 246 87.8
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 4.2e-120 434.9 243 87.7
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 4.2e-120 434.9 285 78.9
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 5.5e-120 434.5 243 88.5
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.5e-120 434.5 246 87.4
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 7.2e-120 434.1 243 88.1
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 7.2e-120 434.1 243 88.1
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 7.2e-120 434.1 243 88.1
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.2e-119 433.3 247 87.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.2e-119 433.3 248 87.5
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-119 433.3 243 88.1
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 1.6e-119 433.0 243 87.7
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 1.6e-119 433.0 243 87.7
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.6e-119 433.0 246 86.6
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 1.6e-119 433.0 246 86.6
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.6e-119 433.0 246 86.6
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.1e-119 432.6 243 87.7
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 87.2
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 87.2
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 87.2
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 86.8
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.7e-119 432.2 243 86.4
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 2.7e-119 432.2 246 87.0
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.6e-119 431.8 243 86.8
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 3.6e-119 431.8 243 86.8
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-119 431.4 246 87.0
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 6.1e-119 431.0 243 86.8
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 6.1e-119 431.0 244 90.2
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.0e-118 430.3 270 82.6
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.4e-118 429.9 243 86.8
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 1.4e-118 429.9 244 87.7
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.8e-118 429.5 243 87.2
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.8e-118 429.5 235 90.6
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 3.0e-118 428.7 243 86.8
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 3.9e-118 428.3 244 87.7
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 8.8e-118 427.2 247 86.2
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.5e-117 426.4 243 86.0
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 3.3e-117 425.2 243 84.8
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 7.4e-117 424.1 243 86.0
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 9.7e-117 423.7 243 85.2
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.2e-116 422.5 244 86.1
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 6.3e-116 421.0 263 81.0
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.1e-115 420.2 244 85.7
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.1e-115 420.2 288 76.4
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.4e-115 419.9 243 87.7
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.8e-115 419.5 247 84.6
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 5.3e-115 417.9 247 85.0
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.0e-114 416.0 305 72.1
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.1e-112 410.2 252 82.9
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.7e-111 405.6 249 79.9
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 6.7e-110 401.0 254 79.1
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 3.3e-109 398.7 253 77.9
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 5.7e-109 397.9 333 64.0
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 9.7e-109 397.1 252 79.8
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.2e-108 396.0 252 78.2
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.4e-107 392.5 254 76.8
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 7.7e-106 387.5 214 89.3
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.7e-105 386.3 265 76.6
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.8e-105 385.2 210 89.0
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 3.8e-105 385.2 210 89.0
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 9.8e-101 370.5 213 86.4
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 2.8e-100 369.0 360 58.1
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 9.8e-93 344.0 245 73.5
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 8.6e-89 330.9 247 71.7
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 2.1e-87 326.2 198 85.9
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.7e-84 316.6 246 68.7
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.9e-81 305.4 172 89.0
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 8.6e-81 304.3 172 89.0
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.1e-80 303.9 164 90.9
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.5e-80 302.8 179 84.9
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-79 298.5 165 88.5
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.6e-71 273.5 276 55.1
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.5e-61 240.4 242 49.6
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.3e-57 226.5 138 80.4
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 9.6e-48 194.5 232 44.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 1.4e-46 190.7 250 43.2
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.8e-46 190.3 246 49.2
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 4.9e-44 182.2 102 87.3
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.5e-40 170.6 96 86.5
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 5.6e-40 168.7 199 52.8
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 9.3e-35 151.4 164 53.7
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 9.0e-30 134.8 137 55.5
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 1.7e-28 130.6 82 76.8
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 1.4e-27 127.5 84 75.0
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.8e-25 120.6 89 73.0
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 2.3e-25 120.2 229 37.1
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.3e-24 116.3 82 73.2
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 7.4e-24 115.2 212 40.6
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 5.0e-20 102.4 101 49.5
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 5.1e-17 92.4 51 84.3
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 5.7e-16 89.0 57 77.2
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.1e-14 84.7 46 82.6
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 9.1e-14 81.6 76 63.2
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 9.1e-14 81.6 51 78.4
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 7.7e-13 78.6 52 82.7
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 5.5e-11 72.4 79 53.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 7.2e-11 72.0 38 86.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 1.4e-09 67.8 96 49.0
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 6.7e-09 65.5 94 45.7
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.0e-08 63.9 45 75.6
HanXRQChr07g0188441 Helianthus annuus HOM05D065128 ORTHO05D224283 2.2e-07 60.5 34 88.2
HanXRQChr04g0111731 Helianthus annuus HOM05D065128 ORTHO05D222104 2.8e-07 60.1 34 88.2
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 3.1e-06 56.6 89 43.8
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 4.1e-06 56.2 98 42.9


User provided reference genes

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