Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.1e-91 339.0 169 100.0
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.7e-67 259.6 170 72.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 1.6e-49 199.9 163 57.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 4.1e-42 175.3 156 52.6
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 9.1e-42 174.1 160 51.2
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 9.1e-42 174.1 160 51.2
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.7e-41 172.6 161 49.7
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.7e-41 172.6 162 48.8
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 3.5e-41 172.2 160 53.1
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 5.9e-41 171.4 156 50.6
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 5.9e-41 171.4 162 48.1
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.0e-40 170.6 163 47.9
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.7e-40 169.9 155 51.6
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.9e-40 169.1 167 48.5
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 2.9e-40 169.1 164 50.6
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.8e-40 168.7 159 50.9
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 6.6e-40 167.9 162 48.1
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 8.6e-40 167.5 160 49.4
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.1e-39 167.2 148 50.7
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.5e-39 166.0 142 52.8
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.2e-39 165.2 159 49.1
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 9.5e-39 164.1 154 51.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 9.5e-39 164.1 161 48.4
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 9.5e-39 164.1 159 48.4
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.2e-38 163.7 159 48.4
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.2e-38 163.7 149 49.0
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.2e-38 163.7 159 48.4
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.1e-38 162.9 147 47.6
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 3.6e-38 162.2 158 46.2
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 3.6e-38 162.2 154 52.6
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.7e-38 161.8 165 46.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 4.7e-38 161.8 163 45.4
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 8.0e-38 161.0 159 47.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.3e-37 159.5 134 52.2
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 8.9e-37 157.5 167 44.9
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-36 157.1 159 45.9
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.2e-36 157.1 168 45.2
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.5e-36 156.8 167 44.9
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.0e-36 156.4 159 45.9
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.0e-36 156.4 159 45.9
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 2.0e-36 156.4 158 45.6
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.6e-36 156.0 167 44.3
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 7.5e-36 154.5 167 43.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.5e-36 154.5 167 43.7
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.7e-35 153.3 152 45.4
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.2e-35 152.9 159 44.7
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 3.7e-35 152.1 149 48.3
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.1e-34 150.6 164 43.3
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.8e-34 149.8 155 43.9
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.8e-34 149.8 135 46.7
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 2.4e-34 149.4 155 43.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.4e-34 149.4 167 43.7
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 4.1e-34 148.7 159 45.3
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.1e-34 148.7 163 43.6
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.4e-34 148.3 155 41.9
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 5.4e-34 148.3 164 42.1
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 5.4e-34 148.3 162 45.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 5.4e-34 148.3 162 45.1
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 9.2e-34 147.5 152 44.7
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.6e-33 146.7 158 43.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 2.0e-33 146.4 157 43.9
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.0e-33 146.4 161 44.1
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.5e-33 145.2 156 42.3
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.5e-33 145.2 156 42.3
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 7.8e-33 144.4 160 42.5
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.0e-32 144.1 150 40.7
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.0e-32 144.1 158 43.7
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.3e-32 143.7 159 44.7
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.7e-32 143.3 157 42.7
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.3e-32 142.9 160 45.6
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.9e-32 142.5 128 50.0
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 3.9e-32 142.1 153 44.4
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 6.6e-32 141.4 156 43.6
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.6e-32 141.0 156 41.7
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 8.6e-32 141.0 152 42.8
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.1e-31 140.6 147 42.9
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.5e-31 140.2 155 40.6
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.9e-31 139.8 154 42.9
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 4.3e-31 138.7 162 39.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 5.6e-31 138.3 158 41.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 7.3e-31 137.9 158 38.0
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.6e-30 136.7 159 39.6
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 2.1e-30 136.3 161 39.1
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 2.8e-30 136.0 164 40.9
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 2.8e-30 136.0 160 38.8
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.6e-30 135.6 164 42.1
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 3.6e-30 135.6 140 41.4
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 4.7e-30 135.2 159 40.3
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 6.1e-30 134.8 154 37.7
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 6.1e-30 134.8 165 38.2
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 6.1e-30 134.8 156 40.4
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 8.0e-30 134.4 162 37.0
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 8.0e-30 134.4 163 38.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 8.0e-30 134.4 157 40.1
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 2.3e-29 132.9 152 39.5
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.3e-29 132.9 159 40.3
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 4.0e-29 132.1 153 40.5
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 5.2e-29 131.7 158 40.5
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 5.2e-29 131.7 169 37.3
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 6.8e-29 131.3 161 39.8
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.5e-28 130.2 153 39.9
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.5e-28 130.2 158 39.9
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.0e-28 129.8 168 36.9
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 4.4e-28 128.6 156 41.0
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 4.4e-28 128.6 158 39.2
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 5.8e-28 128.3 166 38.0
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 5.8e-28 128.3 153 39.9
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 7.5e-28 127.9 156 40.4
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 2.2e-27 126.3 152 39.5
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 2.9e-27 125.9 159 39.0
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.9e-27 125.9 158 41.8
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.9e-27 125.9 158 41.8
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 2.9e-27 125.9 148 39.9
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.7e-27 125.6 156 40.4
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 8.3e-27 124.4 151 39.1
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-26 123.6 156 39.7
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.4e-26 123.6 156 39.7
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.9e-26 123.2 149 41.6
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.9e-26 123.2 154 41.6
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 3.2e-26 122.5 147 36.1
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.1e-26 122.1 157 36.9
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.4e-26 121.7 157 36.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 5.4e-26 121.7 162 34.6
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.6e-25 120.2 157 36.3
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.6e-25 120.2 154 37.0
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 2.3e-24 116.3 155 38.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 3.9e-24 115.5 156 39.1
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 3.9e-24 115.5 158 34.8
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 5.0e-24 115.2 156 39.7
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 6.6e-24 114.8 156 39.1
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.5e-23 112.8 159 37.1
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.2e-22 110.5 160 35.6
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 2.8e-22 109.4 150 35.3
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 6.2e-22 108.2 100 49.0
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 5.2e-21 105.1 161 36.6
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.6e-20 102.8 107 43.0
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 2.6e-20 102.8 155 35.5
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.4e-20 102.4 148 33.1
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 4.4e-20 102.1 115 40.0
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 9.8e-20 100.9 161 35.4
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 9.8e-20 100.9 129 40.3
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 2.4e-18 96.3 105 38.1
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.1e-17 93.2 161 35.4
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.3e-16 90.5 117 38.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.7e-16 90.1 122 34.4
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-15 87.4 154 37.0
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.5e-15 87.0 164 31.7
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 7.3e-15 84.7 73 49.3
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.2e-14 81.6 151 31.8
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 1.1e-13 80.9 143 29.4
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.1e-13 80.9 147 32.7
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-13 80.5 156 30.1
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.8e-13 80.1 168 31.5
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.3e-13 79.7 147 32.7
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.0e-12 76.6 156 32.7
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.3e-11 73.9 132 28.8
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.9e-11 72.8 93 40.9
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.7e-11 72.4 150 28.7
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 4.9e-11 72.0 159 29.6
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 8.3e-11 71.2 99 35.4
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.3e-08 63.9 154 29.2
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.7e-08 63.5 154 29.9
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.7e-08 63.5 154 29.9
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.1e-08 62.0 118 33.1
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 3.3e-07 59.3 160 29.4
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 4.3e-07 58.9 147 27.9


User provided reference genes

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