Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 8.8e-44 179.9 89 100.0
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-25 118.2 73 83.6
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-24 115.9 73 82.2
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.6e-24 115.9 73 82.2
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.5e-24 114.8 73 80.8
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.5e-24 114.8 73 80.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 4.5e-24 114.4 73 80.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 4.5e-24 114.4 73 80.8
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.9e-24 114.0 73 80.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 7.7e-24 113.6 73 79.5
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 7.7e-24 113.6 73 79.5
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 7.7e-24 113.6 73 79.5
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 7.7e-24 113.6 73 79.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 7.7e-24 113.6 73 80.8
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-23 113.2 73 80.8
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-23 113.2 73 79.5
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.0e-23 113.2 73 79.5
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 78.1
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.3e-23 112.8 73 79.5
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.7e-23 112.5 73 79.5
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 2.2e-23 112.1 73 79.5
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.8e-23 111.3 73 79.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 3.8e-23 111.3 73 79.5
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.8e-23 111.3 73 78.1
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 3.8e-23 111.3 73 78.1
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 5.0e-23 110.9 83 71.1
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 5.0e-23 110.9 74 78.4
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 78.1
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 78.1
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.0e-23 110.9 74 78.4
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 5.0e-23 110.9 73 79.5
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.5e-23 110.5 73 78.1
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.5e-23 110.2 73 78.1
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 8.5e-23 110.2 73 78.1
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-22 109.8 73 76.7
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-22 109.8 73 76.7
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.1e-22 109.8 73 78.1
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.5e-22 109.4 73 76.7
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.5e-22 109.4 73 76.7
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.5e-22 109.4 73 76.7
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.5e-22 109.4 73 76.7
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.9e-22 109.0 73 76.7
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.9e-22 109.0 73 76.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.9e-22 109.0 73 76.7
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.9e-22 109.0 73 78.1
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.9e-22 109.0 74 75.7
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.9e-22 109.0 74 77.0
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.9e-22 109.0 74 77.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.5e-22 108.6 72 76.4
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.5e-22 108.6 72 76.4
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.5e-22 108.6 73 76.7
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 3.2e-22 108.2 73 76.7
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 4.2e-22 107.8 72 76.4
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.2e-22 107.8 73 76.7
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 5.5e-22 107.5 73 76.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 5.5e-22 107.5 73 75.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 5.5e-22 107.5 73 76.7
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.5e-22 107.5 73 75.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 5.5e-22 107.5 73 76.7
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 7.2e-22 107.1 72 75.0
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 7.2e-22 107.1 73 75.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.6e-21 105.9 73 75.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.6e-21 105.9 73 75.3
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.6e-21 105.9 73 75.3
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 3.6e-21 104.8 69 78.3
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.3e-20 102.1 69 75.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.3e-20 102.1 69 75.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.3e-20 102.1 69 75.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 5.2e-20 100.9 72 72.2
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 8.8e-20 100.1 69 73.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.2e-19 99.8 74 71.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.5e-19 99.4 73 71.2
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.5e-19 99.4 73 71.2
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 6.3e-18 94.0 81 61.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.8e-17 92.4 70 68.6
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.8e-17 92.4 73 64.4
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 7.0e-17 90.5 73 67.1
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.9e-15 85.1 74 63.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 7.2e-14 80.5 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 4.7e-13 77.8 78 53.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 8.0e-13 77.0 83 55.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 8.0e-13 77.0 73 56.2
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.3e-12 75.5 73 56.2
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.0e-12 74.7 56 62.5
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.2e-10 68.9 77 48.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-09 66.2 35 82.9
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 4.1e-09 64.7 80 46.2
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 4.1e-09 64.7 35 82.9
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.1e-09 64.7 74 50.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 7.0e-09 63.9 66 54.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 5.9e-08 60.8 35 74.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.3e-07 59.7 31 90.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.3e-06 55.1 26 88.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 9.5e-06 53.5 76 43.4


User provided reference genes

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