Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 9.5e-32 139.4 64 100.0
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 9.5e-32 139.4 64 100.0
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 4.7e-31 137.1 62 100.0
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 1.4e-30 135.6 62 98.4
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 6.8e-30 133.3 62 98.4
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.2e-28 128.3 62 93.5
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.0e-27 123.2 62 85.5
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.0e-27 123.2 62 85.5
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 2.7e-26 121.3 62 85.5
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 3.5e-26 120.9 62 87.1
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 3.5e-26 120.9 62 87.1
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.5e-26 120.9 62 83.9
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.5e-26 120.6 61 85.2
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 4.5e-26 120.6 62 85.5
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 7.7e-26 119.8 62 85.5
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 82.3
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 85.5
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 85.5
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 85.5
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 85.5
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 1.0e-25 119.4 62 85.5
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 1.7e-25 118.6 62 80.6
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 2.3e-25 118.2 62 80.6
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 2.9e-25 117.9 62 80.6
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 3.8e-25 117.5 62 82.3
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 5.0e-25 117.1 62 79.0
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.0e-25 117.1 62 80.6
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 5.0e-25 117.1 62 82.3
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 6.6e-25 116.7 62 80.6
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 6.6e-25 116.7 62 80.6
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 80.6
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 82.3
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 82.3
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 82.3
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 82.3
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 8.6e-25 116.3 62 82.3
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 1.1e-24 115.9 62 79.0
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 1.1e-24 115.9 64 82.8
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 2.5e-24 114.8 62 79.0
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-24 114.4 62 79.0
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 3.3e-24 114.4 62 77.4
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.3e-24 114.4 61 80.3
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 4.3e-24 114.0 60 80.0
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 7.3e-24 113.2 61 83.6
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 7.3e-24 113.2 62 80.6
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.6e-23 112.1 62 80.6
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 6.1e-23 110.2 62 80.6
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 1.8e-22 108.6 57 78.9
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 3.0e-22 107.8 61 78.7
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 8.9e-22 106.3 51 98.0
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 4.4e-21 104.0 61 77.0
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 4.4e-21 104.0 61 77.0
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 1.3e-20 102.4 62 75.8
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 1.3e-20 102.4 62 75.8
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 2.2e-20 101.7 61 75.4
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 3.7e-20 100.9 58 75.9
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 1.4e-19 99.0 61 72.1
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 1.4e-19 99.0 61 75.4
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.8e-19 98.6 62 71.0
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.8e-19 98.6 62 71.0
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 7.0e-19 96.7 42 100.0
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.6e-18 95.5 62 74.2
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 2.7e-18 94.7 59 71.2
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 2.7e-18 94.7 50 80.0
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 8.6e-17 89.7 61 67.2
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.7e-15 84.0 61 59.0
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.4e-14 82.4 61 59.0
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 8.9e-14 79.7 61 60.7
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 1.2e-13 79.3 45 80.0
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 4.4e-13 77.4 51 72.5
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.2e-12 75.1 62 58.1
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 4.9e-12 73.9 45 71.1
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.1e-11 72.8 61 57.4
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.4e-11 72.4 61 57.4
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 6.0e-10 67.0 60 53.3
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 5.0e-09 63.9 37 73.0
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 5.0e-09 63.9 38 76.3
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 4.3e-08 60.8 67 52.2
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 1.8e-06 55.5 61 47.5


User provided reference genes

Program Settings