Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 2152.5 1121 100.0
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1626.3 1112 75.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1593.6 1115 76.0
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1449.1 1131 66.9
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1448.7 1126 66.9
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1434.1 1127 68.2
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1432.5 1141 67.5
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1424.8 1130 66.6
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1080 68.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1409.0 1129 66.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1400.2 1130 66.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1394.4 1135 65.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1393.6 1131 66.3
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1386.3 1060 69.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1384.0 1114 66.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1133 65.2
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1381.7 1137 65.9
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1380.9 1127 64.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1376.7 1126 66.3
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1372.8 1109 65.7
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1122 65.3
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1371.7 1127 64.2
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1371.7 1114 65.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1369.4 1112 65.5
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1366.7 1012 70.1
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1366.3 1133 65.4
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1361.3 1124 65.5
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1354.3 1124 63.5
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1354.0 1237 60.6
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1353.6 1084 66.5
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1347.8 1127 64.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1343.9 1117 62.6
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1340.5 1074 64.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1338.6 1135 61.9
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1337.4 1166 61.5
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1336.6 1114 62.9
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1107 62.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1147 63.9
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1323.1 1123 61.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1321.6 1109 62.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1319.7 1110 62.0
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1317.4 1136 64.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1312.0 1143 60.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1302.7 1114 61.5
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1302.7 1120 61.6
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1302.3 1105 61.0
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1113 61.4
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1121 61.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1117 62.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1296.6 1008 66.9
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1292.3 1129 62.3
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1290.8 1121 62.5
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1082 62.1
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1286.9 1122 62.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1122 62.1
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1122 62.5
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1077 62.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1098 61.5
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1279.2 1106 61.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1275.8 1128 60.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1270.0 1125 61.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1270.0 1123 59.2
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1141 59.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1045 62.1
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1115 62.2
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1114 61.8
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1257.3 1121 59.6
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1256.1 1078 62.1
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1254.2 1039 62.0
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 1092 60.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 1123 59.8
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1248.4 1106 61.3
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1247.3 1079 61.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1085 60.5
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1243.8 1131 58.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1243.4 1095 62.9
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1107 60.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1241.9 1061 60.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1234.9 1126 59.6
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1229.5 1097 58.7
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1223.4 1068 59.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1223.4 1067 59.8
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1219.1 1079 60.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1217.2 1072 60.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1215.3 1078 59.3
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1213.7 1374 50.8
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1213.0 1123 59.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1212.6 1072 59.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1211.1 1074 59.1
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1208.0 1118 59.6
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1203.0 1133 59.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1190.3 899 67.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1186.4 1097 57.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1174.5 899 66.9
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1167.9 1039 58.6
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1150.2 1048 58.9
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1144.0 1077 55.8
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1135.6 987 59.3
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1113.6 1073 54.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1112.1 1103 53.1
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1083.6 1064 55.1
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.3e-309 1066.6 1113 53.9
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 2.2e-309 1065.8 809 67.5
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.7e-301 1039.6 874 65.0
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.4e-301 1037.3 676 75.1
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 5.8e-294 1014.6 1114 52.4
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 4.0e-287 991.9 1071 52.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 5.8e-286 988.0 956 54.9
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.3e-280 970.3 1005 51.6
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 3.6e-267 925.6 783 61.0
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.0e-266 924.1 1070 47.0
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 4.0e-250 869.0 964 47.4
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 4.4e-241 839.0 1005 46.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-221 773.9 546 72.0
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-221 773.9 546 72.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.2e-215 753.1 643 65.2
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.9e-196 690.6 1021 40.6
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.0e-194 682.9 579 62.0
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.9e-149 533.5 387 69.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.3e-93 348.2 399 49.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.2e-78 299.3 201 77.1
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.4e-61 241.9 580 27.9
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.3e-54 219.5 184 67.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 5.8e-52 210.7 143 69.9
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.6e-46 192.6 164 56.7
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.5e-44 186.0 171 56.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 3.7e-38 164.9 617 23.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.7e-38 164.9 208 47.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.6e-36 158.7 174 51.1
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.7e-35 156.0 389 29.8
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 9.4e-34 150.2 148 52.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.3e-30 137.5 219 41.1
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-27 128.3 121 57.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.3e-21 107.8 96 54.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 5.5e-18 97.8 257 27.6
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.7e-15 87.0 106 46.2
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.4e-13 83.2 74 62.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 2.2e-11 75.9 68 57.4
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.8e-11 75.1 295 25.8
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.2e-10 70.9 77 54.5
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 3.0e-08 65.5 98 41.8
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.0e-07 62.8 120 35.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 5.7e-07 61.2 48 58.3
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.7e-06 59.7 50 48.0


User provided reference genes

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