Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 0.0e+00 1708.0 915 100.0
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 0.0e+00 1363.6 921 79.4
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 0.0e+00 1309.3 884 78.2
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1112.8 933 64.6
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1075.8 928 63.5
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 8.1e-310 1067.0 888 64.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.6e-308 1062.0 933 62.3
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 6.4e-307 1057.4 873 64.9
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 7.3e-303 1043.9 921 60.8
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 9.9e-300 1033.5 923 60.3
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.0e-296 1023.5 873 62.7
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 3.3e-295 1018.5 882 61.9
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 7.3e-295 1017.3 869 62.6
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 9.6e-295 1016.9 930 60.3
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 2.1e-294 1015.8 878 62.1
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 2.4e-293 1012.3 943 59.6
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 5.3e-293 1011.1 874 60.9
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.4e-292 1008.4 929 60.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 867 62.1
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.2e-291 1005.7 939 59.6
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 4.6e-289 998.0 930 59.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.0e-288 996.9 866 61.8
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 2.3e-288 995.7 863 61.6
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 3.3e-287 991.9 866 60.9
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.6e-287 991.1 860 61.6
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 9.6e-287 990.3 874 60.6
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.1e-285 985.3 871 60.4
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 9.0e-285 983.8 878 60.5
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.2e-284 983.4 865 61.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.4e-284 981.9 878 60.5
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 9.9e-284 980.3 863 61.8
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 4.9e-283 978.0 875 60.3
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.4e-282 975.7 878 60.0
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 5.5e-282 974.5 878 60.3
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 1.6e-281 973.0 866 61.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 2.1e-281 972.6 870 60.3
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.8e-280 969.5 874 59.4
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.3e-280 969.1 886 60.4
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 5.1e-280 968.0 892 59.2
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.6e-278 963.0 841 62.7
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 6.2e-278 961.1 889 57.6
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.1e-277 960.3 872 58.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 5.8e-276 954.5 932 57.4
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.1e-274 950.3 866 59.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 2.7e-273 945.7 928 57.2
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 2.3e-272 942.6 863 57.9
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 5.1e-272 941.4 866 59.5
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.5e-271 939.9 858 59.4
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.9e-271 939.5 875 57.7
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.7e-270 935.3 934 55.8
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 2.0e-268 929.5 858 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 2.6e-268 929.1 888 56.6
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 3.8e-267 925.2 910 54.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.5e-266 922.5 880 57.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 3.2e-266 922.2 882 55.9
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.3e-264 916.8 880 57.0
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.3e-264 916.0 873 56.4
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 3.0e-264 915.6 866 58.1
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 3.9e-264 915.2 863 55.4
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.7e-264 914.4 870 57.5
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 8.7e-264 914.1 878 57.4
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.9e-263 912.9 858 56.8
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 4.3e-263 911.8 871 55.9
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 8.2e-262 907.5 862 55.2
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.4e-261 906.7 863 57.1
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 5.9e-260 901.4 953 52.7
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.6e-257 892.1 868 56.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 5.1e-256 888.3 872 56.1
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.2e-254 882.9 871 55.6
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 2.8e-254 882.5 862 56.5
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.1e-253 880.6 880 55.1
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 4.1e-253 878.6 880 55.6
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 6.9e-253 877.9 868 54.7
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 3.4e-252 875.5 878 55.6
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 3.4e-252 875.5 878 55.6
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.2e-249 867.1 864 54.9
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 2.1e-249 866.3 870 54.0
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 6.1e-249 864.8 886 55.0
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.4e-245 853.6 782 60.4
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.8e-245 853.2 871 54.0
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 7.0e-245 851.3 878 54.6
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.6e-244 849.4 877 54.0
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 8.5e-243 844.3 862 54.1
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.8e-240 836.6 797 58.2
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.5e-239 833.6 749 59.1
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 7.5e-239 831.2 917 51.6
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 6.3e-238 828.2 870 52.4
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.7e-236 821.2 867 53.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 7.7e-236 821.2 731 60.9
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 4.7e-233 812.0 799 55.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 5.2e-232 808.5 870 52.6
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.2e-231 807.4 658 66.4
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.0e-227 794.3 733 58.9
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 6.8e-216 755.0 808 50.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 8.4e-190 668.3 552 63.4
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 3.6e-185 652.9 638 56.4
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 3.5e-180 636.3 547 59.4
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 2.9e-174 616.7 610 53.0
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 6.7e-171 605.5 881 40.9
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.8e-168 597.4 869 41.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-163 581.3 892 39.0
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.5e-162 577.0 893 39.0
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-155 554.3 709 48.7
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 2.2e-153 547.4 474 60.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.2e-148 531.6 800 43.6
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 4.4e-138 496.5 853 36.1
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-115 421.0 476 52.5
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 4.0e-107 393.7 377 56.8
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.8e-107 392.9 381 56.4
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.9e-102 377.1 909 31.4
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 8.9e-99 365.9 953 30.7
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 7.5e-98 362.8 986 28.6
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.0e-94 350.9 433 51.3
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.8e-91 341.7 346 53.2
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.1e-84 318.2 944 28.2
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.5e-82 312.0 311 56.6
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.2e-79 302.4 456 45.4
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 3.3e-77 294.3 291 55.7
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.6e-76 292.0 313 54.6
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-68 265.4 265 54.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.6e-60 237.7 219 57.1
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.6e-58 229.9 263 52.5
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.7e-54 216.5 183 65.6
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 8.1e-52 209.9 394 40.1
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 2.4e-51 208.4 161 62.7
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.7e-47 194.9 161 59.6
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.3e-46 191.8 266 41.7
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.7e-46 189.9 343 37.0
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 6.5e-41 173.7 132 65.9
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 6.7e-38 163.7 155 55.5
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 7.2e-32 143.7 130 60.8
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.3e-30 138.7 177 43.5
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 6.7e-30 137.1 109 66.1
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 8.2e-28 130.2 96 71.9
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 4.1e-27 127.9 169 47.3
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 3.9e-22 111.3 96 61.5
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.9e-17 95.1 63 79.4
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.6e-15 89.4 95 53.7
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.9e-14 84.7 52 76.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 5.2e-14 84.3 92 51.1
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 8.8e-14 83.6 137 40.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-12 79.3 119 43.7
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.2e-12 77.0 105 43.8
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 6.5e-09 67.4 63 52.4
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 1.0e-06 60.1 60 46.7


User provided reference genes

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