Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 6.6e-216 753.8 402 100.0
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 9.7e-74 281.6 442 46.6
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.3e-46 191.4 493 37.9
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 3.6e-44 183.3 473 38.3
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 1.8e-43 181.0 398 41.7
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 4.5e-39 166.4 506 35.2
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 1.0e-38 165.2 513 35.3
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.3e-38 164.9 418 39.7
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.9e-38 163.7 453 33.3
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 2.9e-38 163.7 513 35.3
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 6.5e-38 162.5 492 34.8
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.1e-37 161.8 511 33.9
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.9e-37 161.0 452 35.0
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.5e-37 160.6 484 35.1
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 7.2e-37 159.1 513 33.7
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.2e-36 158.3 474 35.4
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 2.1e-36 157.5 455 36.3
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.1e-36 157.5 352 38.9
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 2.8e-36 157.1 453 38.0
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 4.7e-36 156.4 511 33.5
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 8.0e-36 155.6 450 36.7
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.4e-35 154.8 508 33.9
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 2.3e-35 154.1 428 36.9
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.3e-35 154.1 493 33.9
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 4.0e-35 153.3 469 35.4
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 5.2e-35 152.9 493 33.7
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 8.8e-35 152.1 462 34.0
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 8.8e-35 152.1 459 32.9
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.2e-34 151.8 469 35.2
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 2.0e-34 151.0 474 33.8
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.0e-34 151.0 465 33.3
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.0e-34 151.0 465 33.3
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.7e-33 146.7 486 33.5
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 4.9e-33 146.4 486 33.5
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 6.3e-33 146.0 387 34.9
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.4e-32 144.8 504 33.5
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.4e-32 144.8 485 34.0
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.8e-32 144.4 477 33.8
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.8e-32 144.4 488 35.0
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 2.4e-32 144.1 433 36.0
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.4e-32 144.1 459 34.4
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 2.4e-32 144.1 414 36.5
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.1e-32 143.3 491 34.4
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 4.1e-32 143.3 485 34.6
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.1e-32 143.3 503 33.6
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 5.4e-32 142.9 453 34.2
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 5.4e-32 142.9 485 34.4
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 9.2e-32 142.1 489 34.8
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.6e-31 141.4 455 34.7
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.6e-31 141.4 455 34.3
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 2.7e-31 140.6 487 32.4
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 3.5e-31 140.2 488 33.6
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 4.5e-31 139.8 505 33.7
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 4.5e-31 139.8 475 33.3
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 2.3e-30 137.5 490 33.9
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 5.0e-30 136.3 427 35.1
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 5.0e-30 136.3 452 33.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.9e-29 134.4 473 34.0
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 3.3e-29 133.7 451 33.7
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.3e-29 133.3 498 34.3
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 5.6e-29 132.9 468 32.5
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 7.3e-29 132.5 496 34.1
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 9.5e-29 132.1 476 32.8
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.2e-28 131.7 522 32.4
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 1.6e-28 131.3 444 35.8
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 1.6e-28 131.3 436 34.9
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 3.6e-28 130.2 500 31.4
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 3.6e-28 130.2 443 33.4
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.6e-28 130.2 494 34.2
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.7e-28 129.8 490 33.3
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 4.7e-28 129.8 401 34.2
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.1e-28 129.4 456 35.3
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.0e-27 128.6 471 32.9
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 1.4e-27 128.3 470 31.9
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.8e-27 127.9 401 34.4
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 2.3e-27 127.5 432 35.2
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 2.3e-27 127.5 461 32.8
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 5.2e-27 126.3 415 33.3
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 5.2e-27 126.3 471 31.6
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 8.9e-27 125.6 482 30.3
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 1.2e-26 125.2 450 33.1
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 2.0e-26 124.4 477 33.3
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 2.6e-26 124.0 502 31.7
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 2.6e-26 124.0 391 33.0
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 4.4e-26 123.2 437 32.3
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 4.4e-26 123.2 406 33.7
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 4.4e-26 123.2 477 32.3
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 7.5e-26 122.5 426 34.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 9.8e-26 122.1 442 33.5
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.7e-25 121.3 486 31.7
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.2e-25 120.9 465 33.3
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 2.9e-25 120.6 472 33.3
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 4.1e-24 116.7 506 31.2
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 7.0e-24 115.9 441 34.7
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.2e-23 115.2 491 30.8
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 2.7e-23 114.0 291 35.7
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.0e-22 112.1 426 33.3
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 1.7e-22 111.3 333 34.8
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.7e-22 111.3 497 30.6
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.9e-22 110.2 480 29.6
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 1.1e-21 108.6 455 31.4
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.1e-21 108.6 474 31.9
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.5e-21 108.2 463 29.8
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 5.6e-21 106.3 468 30.8
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.2e-20 105.1 487 30.6
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 1.6e-20 104.8 454 32.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 1.1e-19 102.1 444 31.1
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 3.1e-19 100.5 465 31.8
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.1e-19 100.5 236 41.1
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.0e-19 100.1 236 41.1
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 8.9e-19 99.0 464 31.5
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 5.8e-18 96.3 236 40.3
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 9.8e-18 95.5 501 28.5
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.7e-17 94.7 432 32.4
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.2e-15 88.6 462 30.7
Nn1g00777 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-15 88.6 177 39.0
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 6.0e-15 86.3 237 35.9
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 6.0e-15 86.3 272 37.1
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 1.0e-14 85.5 259 38.2
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 5.0e-14 83.2 335 33.1
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 8.6e-14 82.4 313 31.3
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.1e-13 82.0 472 28.8
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 3.3e-13 80.5 447 28.9
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 2.3e-11 74.3 246 35.4
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 2.3e-11 74.3 355 29.9
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 3.1e-11 73.9 242 35.5
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 8.9e-11 72.4 221 35.3
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 2.6e-10 70.9 235 31.9
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 5.8e-10 69.7 194 36.1
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.3e-09 68.6 412 27.4
QL02p063392 Quercus lobata HOM05D000573 ORTHO05D000425 2.2e-09 67.8 105 46.7
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 1.1e-08 65.5 214 31.8
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.9e-08 64.7 356 28.4
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 4.1e-08 63.5 286 33.2
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 5.4e-08 63.2 286 33.2
QL02p069683 Quercus lobata HOM05D003827 ORTHO05D004518 7.1e-08 62.8 62 59.7
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 9.2e-08 62.4 115 45.2
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 9.2e-08 62.4 402 28.9
Nn5g28224 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-07 62.0 181 32.0
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 1.6e-07 61.6 375 30.1
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 1.6e-07 61.6 286 32.9
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.6e-07 61.6 442 27.4
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 6.0e-07 59.7 417 29.3
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 7.8e-07 59.3 398 28.4
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 3.0e-06 57.4 394 28.4
SGA_v2.0_scaffold214G42261 Striga asiatica HOM05D003827 ORTHO05D004518 8.6e-06 55.8 55 56.4


User provided reference genes

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