Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.2e-173 611.3 318 100.0
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 9.5e-149 530.4 318 87.7
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 9.5e-141 503.8 313 83.1
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.6e-140 501.9 312 82.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.4e-138 495.4 312 81.1
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.3e-137 493.4 312 81.7
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.9e-137 492.3 313 80.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.2e-136 488.8 313 80.2
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.4e-136 488.0 313 79.9
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.0e-136 487.6 310 80.3
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 1.6e-135 486.5 313 79.9
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.5e-133 479.2 313 79.2
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 2.5e-133 479.2 313 79.2
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.3e-133 478.8 313 79.2
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.1e-132 476.1 310 80.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.8e-131 473.0 313 79.2
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.4e-130 468.8 310 79.4
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.4e-130 468.4 325 76.6
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 5.8e-130 468.0 310 79.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 9.8e-130 467.2 312 78.8
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.3e-129 466.8 309 79.9
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.3e-129 466.8 310 77.1
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.7e-129 466.5 310 78.7
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 2.2e-129 466.1 311 77.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.7e-129 465.3 312 78.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 8.3e-129 464.2 314 77.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 8.3e-129 464.2 307 78.5
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 4.1e-128 461.8 310 78.4
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.2e-127 460.3 312 76.9
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.2e-127 460.3 307 77.9
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.7e-127 459.1 315 76.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 4.6e-127 458.4 312 76.0
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 6.0e-127 458.0 300 79.0
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.3e-126 456.8 312 76.3
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.3e-126 456.8 300 78.7
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.3e-126 456.8 301 77.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.7e-126 456.4 314 77.1
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.3e-126 456.1 310 76.5
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 3.0e-126 455.7 307 77.5
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 3.0e-126 455.7 307 77.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.1e-125 453.8 306 78.1
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-125 453.8 300 78.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.5e-125 453.4 300 79.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.9e-125 453.0 311 76.2
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.9e-125 453.0 309 75.7
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 2.5e-125 452.6 306 77.5
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.6e-124 449.9 301 77.4
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.6e-124 448.7 312 75.3
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 4.7e-124 448.4 309 74.8
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 4.7e-124 448.4 309 74.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 6.2e-124 448.0 323 73.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 8.9e-123 444.1 304 76.0
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 8.9e-123 444.1 302 77.2
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 5.8e-122 441.4 309 74.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.7e-121 439.9 312 74.7
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 8.3e-121 437.6 314 72.6
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.1e-120 437.2 312 74.4
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.4e-120 436.8 246 92.7
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.2e-119 433.7 308 74.4
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.0e-118 430.6 303 73.6
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.0e-118 430.6 298 75.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.0e-118 429.1 313 72.8
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 8.6e-118 427.6 301 75.7
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.1e-117 427.2 305 73.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.9e-117 426.4 302 74.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 7.3e-117 424.5 298 74.2
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.8e-116 422.5 303 72.6
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.6e-116 422.2 307 73.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.2e-116 421.4 305 72.1
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 8.1e-116 421.0 314 68.8
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 4.0e-115 418.7 301 72.1
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 8.9e-115 417.5 298 72.5
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 4.4e-114 415.2 298 72.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 9.9e-114 414.1 306 71.9
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.3e-113 413.7 306 74.8
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 1.7e-113 413.3 296 73.0
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 6.4e-113 411.4 301 72.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-112 410.2 314 70.4
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.9e-112 409.8 314 70.7
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.9e-112 409.8 300 71.0
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 3.2e-112 409.1 301 71.8
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 4.1e-112 408.7 306 70.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 9.2e-112 407.5 300 71.7
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.6e-111 406.8 308 71.4
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 7.8e-111 404.4 303 69.3
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-110 403.7 321 68.8
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.3e-110 402.9 321 69.2
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.3e-110 402.9 308 69.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 2.5e-109 399.4 306 69.9
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.3e-109 399.1 291 73.5
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 5.6e-109 398.3 309 68.0
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.6e-109 398.3 298 70.5
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.3e-109 397.9 304 70.7
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 9.6e-109 397.5 298 71.1
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.1e-108 396.4 304 68.8
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.1e-108 396.4 304 68.8
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.7e-108 395.2 305 67.9
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 4.7e-108 395.2 303 68.3
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-108 395.2 304 68.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.1e-107 394.0 309 67.6
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.4e-107 393.7 298 70.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.8e-107 393.3 312 68.9
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.8e-107 393.3 300 69.3
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.1e-107 392.5 314 67.8
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.0e-106 389.8 306 68.0
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 5.8e-106 388.3 298 68.5
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 5.8e-106 388.3 312 67.9
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.8e-105 385.6 310 67.1
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 2.4e-104 382.9 300 67.7
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.2e-104 382.5 286 72.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 4.2e-104 382.1 304 67.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 6.0e-103 378.3 293 70.0
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 5.6e-101 371.7 300 67.0
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 9.6e-101 370.9 305 66.2
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 6.2e-100 368.2 312 64.7
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.6e-98 362.8 240 77.1
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.9e-97 359.4 318 62.6
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.1e-93 347.4 304 62.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 4.5e-82 308.9 218 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.3e-70 270.0 303 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.9e-70 269.2 304 52.3
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.2e-66 257.7 214 65.4
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.6e-63 247.3 290 50.0
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.8e-62 243.8 216 63.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.6e-61 240.0 201 64.2
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 3.3e-61 239.6 299 47.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 5.7e-61 238.8 242 55.4
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 3.5e-58 229.6 295 48.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 3.0e-54 216.5 325 41.5
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.3e-52 211.1 264 50.8
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 9.1e-51 204.9 321 43.3
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.2e-48 196.4 127 77.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-47 194.5 287 41.8
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-47 194.1 126 76.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.2e-40 169.5 299 38.1
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.2e-37 161.4 310 38.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 7.0e-35 152.1 129 63.6
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 7.7e-34 148.7 94 77.7
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.3e-33 147.9 220 43.6
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 9.5e-32 141.7 204 40.7
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 4.9e-28 129.4 92 69.6
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 6.3e-28 129.0 128 54.7
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.0e-25 121.7 77 79.2
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 6.8e-22 109.0 164 43.9
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 6.8e-22 109.0 164 43.9
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 6.8e-22 109.0 164 43.9
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 3.4e-21 106.7 164 41.5
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 5.8e-21 105.9 67 77.6
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.2e-20 104.0 178 44.9
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 4.6e-18 96.3 63 77.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.0e-17 93.6 70 67.1
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.1e-16 91.7 70 65.7
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.5e-16 91.3 111 45.0
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-15 88.2 76 59.2
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-15 87.8 84 59.5
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.6e-10 69.7 101 39.6
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.5e-08 63.9 40 75.0
HanXRQChr15g0476361 Helianthus annuus HOM05D000073 ORTHO05D000033 7.3e-08 62.4 35 77.1
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.1e-06 58.5 59 57.6


User provided reference genes

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