Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1761.1 860 100.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1484.5 868 85.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1453.3 872 84.4
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1452.6 868 84.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1213.4 860 71.2
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1211.1 862 71.3
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1204.1 867 71.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1201.4 862 71.9
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1179.1 865 70.1
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 858 69.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1163.3 877 68.8
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1162.1 864 69.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 860 70.0
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1159.8 860 69.7
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1155.2 864 69.7
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1154.4 869 68.2
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1152.9 897 66.9
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 867 68.4
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 896 67.2
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 847 68.9
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 861 69.0
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1148.7 861 68.9
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1143.6 864 68.4
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1142.5 867 68.3
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1141.7 869 67.5
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 867 68.2
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1138.3 883 67.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 878 67.1
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1136.7 864 68.4
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1136.3 859 68.7
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 896 66.0
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 896 66.0
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 884 67.3
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1127.5 889 66.9
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1127.5 831 69.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 908 65.1
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1124.0 863 68.1
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1119.8 867 66.3
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1119.0 894 66.0
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1118.6 861 66.9
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 891 65.3
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1117.4 864 67.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1117.1 865 67.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 908 64.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 895 66.0
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 869 67.1
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1110.9 867 66.9
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1110.1 863 66.2
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 864 67.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1107.4 870 65.7
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1105.9 878 66.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 866 65.7
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1102.8 877 65.9
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1102.4 869 66.1
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 890 64.3
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 895 64.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 891 64.2
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1099.7 900 64.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 873 65.9
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1098.6 860 66.4
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1098.2 891 64.3
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1096.6 876 65.3
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1096.6 862 66.8
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 870 66.2
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1095.9 871 65.2
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1090.9 887 64.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 857 66.2
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1089.7 894 63.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1089.3 866 66.3
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 877 65.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 859 66.4
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1085.9 914 62.7
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 900 64.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1080.5 915 62.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 860 66.2
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 861 65.6
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.9e-311 1071.6 872 64.0
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.5e-310 1069.3 879 64.4
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 9.9e-310 1066.6 898 63.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 3.8e-309 1064.7 880 64.2
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 4.9e-309 1064.3 867 64.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.4e-308 1062.8 886 63.1
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 3.2e-308 1061.6 862 64.8
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 5.4e-308 1060.8 883 63.4
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 858 64.6
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 3.5e-307 1058.1 891 63.1
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 3.5e-307 1058.1 892 62.6
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 1.0e-306 1056.6 861 64.2
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.3e-305 1051.2 889 63.0
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 9.6e-305 1050.0 876 62.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.8e-304 1048.5 863 64.5
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 2.8e-304 1048.5 863 63.3
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 9.0e-303 1043.5 880 62.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 5.8e-302 1040.8 867 64.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.9e-300 1035.8 875 62.6
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 1.2e-299 1033.1 880 63.5
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.2e-299 1033.1 832 65.9
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 1.6e-299 1032.7 795 65.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.7e-299 1031.9 746 69.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 3.0e-298 1028.5 873 63.5
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.4e-297 1023.8 863 63.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 6.2e-296 1020.8 872 62.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 1.4e-295 1019.6 876 63.5
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 2.0e-294 1015.8 869 62.5
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 5.8e-294 1014.2 870 62.2
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 1.0e-293 1013.4 881 62.4
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 1.0e-293 1013.4 873 62.4
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 3.8e-293 1011.5 874 61.9
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 4.9e-293 1011.1 870 62.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 6.5e-293 1010.7 863 62.2
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.4e-292 1009.6 869 62.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.9e-292 1009.2 869 62.7
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 6.0e-291 1004.2 864 62.2
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-290 1002.7 879 61.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.6e-289 996.9 861 61.3
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.6e-288 996.1 876 61.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.4e-287 992.3 813 64.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.2e-286 989.9 838 63.8
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 3.8e-285 984.9 938 57.8
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.3e-281 971.8 772 65.7
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.3e-281 971.5 867 60.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 6.3e-280 967.6 819 61.9
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 6.3e-280 967.6 826 63.4
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 6.3e-272 941.0 641 74.3
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 5.9e-270 934.5 955 55.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.8e-264 914.8 896 56.5
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.8e-264 914.8 588 76.9
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 5.3e-263 911.4 845 59.1
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.9e-262 907.9 883 57.5
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.3e-261 906.7 833 57.5
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.1e-260 903.7 892 55.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-257 892.9 881 55.7
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.0e-245 851.7 855 53.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.6e-243 845.5 813 56.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.4e-242 843.6 897 53.5
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.4e-239 833.6 826 55.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 9.2e-239 830.9 838 54.2
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 8.0e-235 817.8 794 55.3
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 4.9e-232 808.5 835 53.9
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.4e-231 806.2 813 53.4
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.5e-225 786.9 627 64.3
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 4.1e-207 725.7 845 47.1
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.2e-206 724.2 854 46.6
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 5.6e-204 715.3 570 61.9
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.5e-201 707.2 856 45.8
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.1e-198 696.8 577 64.3
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 4.0e-186 656.0 616 52.9
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 2.4e-178 630.2 607 57.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 2.7e-174 616.7 607 55.8
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 6.5e-168 595.5 880 41.6
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 6.1e-166 589.0 561 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.8e-141 507.7 575 47.7
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.8e-133 481.1 509 52.3
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.1e-130 469.9 430 58.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.7e-115 421.4 604 38.1
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.0e-109 400.2 505 46.1
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 9.2e-106 389.0 401 56.1
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.8e-101 372.9 473 46.1
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.8e-93 348.2 700 32.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 7.1e-90 336.3 264 63.6
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.1e-81 308.1 222 67.1
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.0e-76 291.6 264 58.3
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.1e-65 255.0 175 69.7
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.3e-62 245.7 520 29.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 5.3e-61 240.4 504 30.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.4e-58 232.3 156 73.1
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.9e-32 144.4 197 46.7
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.5e-26 125.9 213 39.9
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-20 105.9 70 72.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 4.5e-20 104.4 74 71.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.9e-18 99.0 78 62.8
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.8e-16 92.4 118 48.3
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.1e-09 68.9 69 52.2
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 3.6e-09 68.2 176 28.4


User provided reference genes

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