Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.0e-99 365.2 184 100.0
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 1.1e-40 170.6 103 85.4
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 4.5e-34 148.7 103 72.8
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 6.5e-33 144.8 85 81.2
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 1.0e-30 137.5 85 74.1
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 3.0e-30 136.0 85 74.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 3.9e-30 135.6 103 67.0
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 6.7e-30 134.8 99 63.6
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 8.7e-30 134.4 103 68.0
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 8.7e-30 134.4 85 71.8
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 1.5e-29 133.7 85 72.9
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.5e-29 133.7 102 63.7
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 1.9e-29 133.3 103 65.0
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 3.3e-29 132.5 85 72.9
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 3.3e-29 132.5 85 70.6
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 4.3e-29 132.1 103 65.0
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 4.3e-29 132.1 85 68.2
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 4.3e-29 132.1 85 72.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 5.7e-29 131.7 85 68.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 7.4e-29 131.3 103 65.0
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 9.7e-29 131.0 85 71.8
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 9.7e-29 131.0 103 66.0
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 9.7e-29 131.0 103 63.1
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 1.6e-28 130.2 99 60.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 2.2e-28 129.8 101 65.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 2.2e-28 129.8 100 66.0
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 2.2e-28 129.8 103 65.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 2.8e-28 129.4 103 64.1
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 2.8e-28 129.4 99 65.7
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 2.8e-28 129.4 85 72.9
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 3.7e-28 129.0 85 70.6
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 4.8e-28 128.6 85 68.2
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 8.2e-28 127.9 103 64.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 8.2e-28 127.9 100 66.0
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 1.1e-27 127.5 85 70.6
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 1.1e-27 127.5 87 66.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 1.4e-27 127.1 85 69.4
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.4e-27 127.1 103 56.3
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 1.8e-27 126.7 103 60.2
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 2.4e-27 126.3 85 68.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 2.4e-27 126.3 88 71.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 3.1e-27 125.9 103 62.1
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.1e-27 125.9 85 65.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 4.1e-27 125.6 85 67.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 4.1e-27 125.6 100 65.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 4.1e-27 125.6 100 65.0
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 4.1e-27 125.6 85 68.2
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 5.3e-27 125.2 85 68.2
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 5.3e-27 125.2 86 67.4
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 6.9e-27 124.8 86 69.8
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 6.9e-27 124.8 86 69.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 6.9e-27 124.8 103 59.2
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 9.0e-27 124.4 85 70.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 9.0e-27 124.4 102 59.8
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 9.0e-27 124.4 85 67.1
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 1.2e-26 124.0 103 64.1
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 1.2e-26 124.0 99 60.6
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 2.0e-26 123.2 100 62.0
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.0e-26 123.2 100 65.0
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 2.0e-26 123.2 85 68.2
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 2.0e-26 123.2 85 68.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 2.0e-26 123.2 85 69.4
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 3.4e-26 122.5 94 62.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 3.4e-26 122.5 102 58.8
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 5.9e-26 121.7 85 64.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 5.9e-26 121.7 98 60.2
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 5.9e-26 121.7 86 69.8
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 7.7e-26 121.3 102 57.8
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 7.7e-26 121.3 102 57.8
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 7.7e-26 121.3 103 63.1
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 1.0e-25 120.9 102 56.9
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.3e-25 120.6 85 68.2
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.3e-25 120.6 100 64.0
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 1.7e-25 120.2 85 63.5
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 1.7e-25 120.2 104 59.6
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 1.7e-25 120.2 85 63.5
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 1.7e-25 120.2 99 63.6
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 2.2e-25 119.8 87 64.4
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 2.2e-25 119.8 85 65.9
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 2.9e-25 119.4 85 67.1
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 2.9e-25 119.4 86 66.3
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 3.8e-25 119.0 101 62.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 6.5e-25 118.2 103 62.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 6.5e-25 118.2 85 62.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 6.5e-25 118.2 86 65.1
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 8.5e-25 117.9 85 63.5
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 8.5e-25 117.9 85 64.7
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 8.5e-25 117.9 85 65.9
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 1.1e-24 117.5 85 62.4
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 4.2e-24 115.5 86 65.1
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.5e-24 115.2 131 46.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 5.5e-24 115.2 86 62.8
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 7.2e-24 114.8 85 61.2
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 9.4e-24 114.4 134 45.5
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.6e-23 113.6 131 45.8
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 1.6e-23 113.6 86 64.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 1.0e-22 110.9 86 62.8
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 1.0e-22 110.9 85 63.5
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 2.3e-22 109.8 86 61.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 1.5e-21 107.1 102 55.9
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 2.0e-21 106.7 85 58.8
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 7.4e-21 104.8 85 58.8
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 1.7e-20 103.6 90 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 2.2e-20 103.2 85 61.2
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 2.0e-18 96.7 70 61.4
HanXRQChr10g0305821 Helianthus annuus HOM05D005590 ORTHO05D221975 1.3e-17 94.0 53 94.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 5.5e-16 88.6 68 61.8
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 9.4e-16 87.8 103 50.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.8e-14 83.6 87 49.4
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.1e-13 80.9 90 47.8
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 4.4e-13 79.0 38 89.5


User provided reference genes

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