Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 8.9e-262 906.4 446 100.0
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 1.5e-205 719.5 432 78.7
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 1.4e-201 706.4 446 74.4
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 1.2e-170 603.6 414 68.8
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 8.0e-170 600.9 429 67.4
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 1.0e-169 600.5 411 69.1
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 2.6e-168 595.9 397 70.3
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 7.5e-168 594.3 442 64.7
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 7.5e-168 594.3 415 66.7
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 2.8e-167 592.4 435 65.1
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 6.3e-167 591.3 415 66.0
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 8.3e-167 590.9 410 68.0
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 1.1e-166 590.5 410 66.6
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.4e-166 589.3 410 66.3
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 4.1e-166 588.6 427 66.3
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 5.4e-166 588.2 410 66.6
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 9.1e-166 587.4 425 65.4
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.6e-165 586.6 410 66.3
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 1.7e-164 583.2 431 64.5
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 2.3e-164 582.8 396 67.7
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 2.9e-164 582.4 423 65.2
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 6.6e-164 581.3 396 67.4
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 6.6e-164 581.3 426 65.7
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 1.1e-163 580.5 429 63.4
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.9e-163 579.7 439 62.6
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 3.3e-163 578.9 415 65.8
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 4.2e-163 578.6 401 67.6
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.6e-162 576.6 439 62.2
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 3.6e-162 575.5 419 66.1
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 3.6e-162 575.5 410 65.4
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 1.0e-161 573.9 401 66.8
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 1.4e-161 573.5 425 64.0
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 1.4e-161 573.5 414 65.2
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 1.4e-161 573.5 415 65.3
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 3.0e-161 572.4 411 65.5
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 5.7e-160 568.2 432 63.2
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 9.8e-160 567.4 408 65.4
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 1.7e-159 566.6 432 62.3
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 2.8e-159 565.8 415 65.3
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 1.1e-158 563.9 435 63.2
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 1.1e-158 563.9 399 65.4
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 7.0e-158 561.2 427 62.3
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.7e-157 559.3 439 60.6
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.7e-157 559.3 439 60.6
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 4.5e-157 558.5 428 63.1
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 7.8e-157 557.8 432 63.4
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 1.0e-156 557.4 397 66.2
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.9e-156 555.8 411 64.5
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 2.9e-156 555.8 432 63.4
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 2.9e-156 555.8 413 63.9
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.8e-156 555.4 396 66.2
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 5.0e-156 555.1 396 66.4
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 3.3e-155 552.4 396 65.7
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 5.6e-155 551.6 402 63.9
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 3.6e-154 548.9 396 65.2
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 8.0e-154 547.7 441 59.6
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 2.3e-153 546.2 407 63.4
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 5.2e-153 545.0 396 64.4
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 2.0e-152 543.1 418 61.5
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 4.4e-152 542.0 399 62.9
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 2.9e-151 539.3 396 63.6
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 4.9e-151 538.5 398 64.6
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 4.9e-151 538.5 405 64.2
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 8.3e-151 537.7 404 62.9
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 1.2e-149 533.9 440 60.2
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 1.6e-149 533.5 410 62.4
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 2.7e-149 532.7 430 59.5
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 3.5e-149 532.3 399 63.7
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 7.8e-149 531.2 440 58.4
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 3.9e-148 528.9 419 60.4
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 5.0e-148 528.5 399 63.9
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 6.6e-148 528.1 406 62.8
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 4.0e-145 518.8 430 57.9
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 8.9e-145 517.7 415 60.2
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 1.1e-142 510.8 433 57.3
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 1.9e-142 510.0 424 58.3
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 1.9e-142 510.0 433 57.3
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 3.2e-142 509.2 404 60.1
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 7.0e-142 508.1 428 57.2
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 7.0e-142 508.1 405 61.5
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 9.2e-142 507.7 429 58.5
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 9.2e-142 507.7 424 58.0
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 1.2e-141 507.3 398 59.8
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 2.7e-141 506.1 403 60.0
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 3.5e-141 505.8 427 58.3
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 7.8e-141 504.6 429 56.9
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 6.6e-140 501.5 411 58.9
Atru.chr13.856 Acer truncatum HOM05D006117 ORTHO05D007996 2.1e-138 496.5 425 57.9
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 3.6e-138 495.7 423 57.4
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.9e-131 473.4 404 57.2
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 2.2e-127 459.9 398 56.5
vmacro21425 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 1.7e-116 423.7 303 66.3
Mapoly0123s0013 Marchantia polymorpha HOM05D006117 ORTHO05D007996 1.2e-112 411.0 392 51.3
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 4.9e-111 405.6 288 67.0
Sc15g0005440 Simmondsia chinensis HOM05D006117 ORTHO05D007996 1.2e-109 401.0 293 64.8
Lalb_Chr08g0245251 Lupinus albus HOM05D006117 ORTHO05D007996 2.1e-109 400.2 290 63.4
Pp3c2_14510 Physcomitrium patens HOM05D006117 ORTHO05D007996 3.9e-108 396.0 404 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1796 Anthoceros agrestis HOM05D006117 ORTHO05D007996 1.1e-107 394.4 392 49.0
Sopen05g029120 Solanum pennellii HOM05D006117 ORTHO05D007996 1.5e-107 394.0 293 65.5
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 4.8e-106 389.0 425 45.2
ATR0739G041 Amborella trichopoda HOM05D006117 ORTHO05D007996 4.5e-96 355.9 288 59.0
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 3.5e-93 346.3 360 46.9
Os03g0232800 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.3e-89 332.4 399 43.6
Os10g0163370 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 7.7e-80 302.0 395 44.6
Zm00001eb124520 Zea mays HOM05D006117 ORTHO05D007996 2.6e-72 276.9 402 39.8
Zm00001eb096400 Zea mays HOM05D006117 ORTHO05D007996 4.8e-66 256.1 429 38.2
Zm00001eb096490 Zea mays HOM05D006117 ORTHO05D007996 4.8e-66 256.1 429 37.8
Os02g0589000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.9e-64 249.2 405 37.0
Os02g0590400 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.5e-62 242.7 407 37.6
Zm00001eb096390 Zea mays HOM05D006117 ORTHO05D007996 2.1e-61 240.7 394 38.8
Zm00001eb399490 Zea mays HOM05D006117 ORTHO05D007996 1.0e-55 221.9 280 41.1
Glyma.04G047002 Glycine max HOM05D006117 ORTHO05D007996 2.9e-55 220.3 164 62.8
Os02g0589700 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.2e-44 183.0 295 35.9
HPP92_023765 Vanilla planifolia HOM05D006117 ORTHO05D007996 1.5e-43 181.4 154 54.5
vmacro21426 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 9.2e-41 172.2 127 61.4
PRCOL_00003976 Prasinoderma coloniale HOM05D006117 ORTHO05D007996 1.3e-39 168.3 439 29.2
Lalb_Chr08g0245261 Lupinus albus HOM05D006117 ORTHO05D007996 4.4e-35 153.3 134 55.2
ATR0739G169 Amborella trichopoda HOM05D006117 ORTHO05D007996 3.5e-32 143.7 106 59.4
Os01g0946300 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 3.2e-17 94.0 159 36.5
PGSC0003DMG400010519 Solanum tuberosum HOM05D006117 ORTHO05D007996 6.8e-12 76.3 53 58.5
CsaV3_1G046370 Cucumis sativus L. HOM05D002501 ORTHO05D002952 2.0e-11 74.7 404 24.5
Lsat_1_v5_gn_8_2401 Lactuca sativa HOM05D002501 ORTHO05D002952 2.0e-11 74.7 430 22.3
BolC7t42277H Brassica oleracea HOM05D006117 ORTHO05D007996 2.6e-11 74.3 70 50.0
HanXRQChr08g0226181 Helianthus annuus HOM05D002501 ORTHO05D002952 2.6e-11 74.3 443 24.6
Zm00001eb120460 Zea mays HOM05D006117 ORTHO05D007996 2.2e-10 71.2 99 38.4
Lsat_1_v5_gn_8_2381 Lactuca sativa HOM05D002501 ORTHO05D002952 4.9e-10 70.1 223 26.5
Lj1g0014123 Lotus japonicus HOM05D002501 ORTHO05D002952 8.4e-10 69.3 346 25.1
Os02g0590200 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.1e-09 68.9 92 43.5
PSO675G4121 Papaver somniferum HOM05D002501 ORTHO05D002952 1.9e-09 68.2 467 23.3
Phvul.008G052100 Phaseolus vulgaris HOM05D002501 ORTHO05D002952 3.2e-09 67.4 346 25.7
Medtr2g075650 Medicago truncatula HOM05D006117 ORTHO05D007996 4.2e-09 67.0 49 61.2
Psat7g130880 Pisum sativum HOM05D002501 ORTHO05D002952 9.3e-09 65.9 424 22.6
vmacro19581 Vaccinium macrocarpon HOM05D002501 ORTHO05D002952 9.3e-09 65.9 221 24.0
AT3G03310 Arabidopsis thaliana HOM05D002501 ORTHO05D002952 1.2e-08 65.5 338 22.8
ECA233G2688 Erigeron canadensis HOM05D002501 ORTHO05D002952 1.2e-08 65.5 223 25.1
Lsat_1_v5_gn_8_2441 Lactuca sativa HOM05D002501 ORTHO05D002952 1.2e-08 65.5 223 25.1
Mapoly0131s0029 Marchantia polymorpha HOM05D002501 ORTHO05D002952 1.6e-08 65.1 231 25.5
FAN02G1567 Fragaria x ananassa HOM05D002501 ORTHO05D002952 2.1e-08 64.7 230 25.2
CANSAT54G0338 Cannabis sativa HOM05D002501 ORTHO05D002952 2.7e-08 64.3 222 26.6
Migut.F01851 Erythranthe guttata HOM05D002501 ORTHO05D002952 3.5e-08 63.9 364 23.6
Pp3c22_13120 Physcomitrium patens HOM05D002501 ORTHO05D002952 3.5e-08 63.9 216 26.4
PSO675G0931 Papaver somniferum HOM05D002501 ORTHO05D002952 6.0e-08 63.2 238 25.6
Ciclev10011705m.g Citrus clementina HOM05D002501 ORTHO05D002952 1.0e-07 62.4 225 24.0
Rhsim05G0165300 Rhododendron simsii HOM05D002501 ORTHO05D002952 1.0e-07 62.4 229 24.0
FvH4_6g00170 Fragaria vesca HOM05D002501 ORTHO05D002952 1.7e-07 61.6 222 26.6
FAN09G1532 Fragaria x ananassa HOM05D002501 ORTHO05D002952 1.7e-07 61.6 222 26.6
Carub.0003s0248 Capsella rubella HOM05D002501 ORTHO05D002952 2.3e-07 61.2 222 24.8
Ciclev10014844m.g Citrus clementina HOM05D002501 ORTHO05D002952 2.3e-07 61.2 312 21.5
MBI08_g18906_MAGBIO Magnolia biondii HOM05D002501 ORTHO05D002952 2.3e-07 61.2 227 23.3
Prupe.6G364000 Prunus persica HOM05D002501 ORTHO05D002952 2.3e-07 61.2 229 24.5
Thecc.05G187600 Theobroma cacao HOM05D002501 ORTHO05D002952 2.3e-07 61.2 228 25.4
AL3G12940 Arabidopsis lyrata HOM05D002501 ORTHO05D002952 3.9e-07 60.5 222 24.3
Haze_04600 Corylus avellana HOM05D002501 ORTHO05D002952 3.9e-07 60.5 223 22.4
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 6.6e-07 59.7 259 23.9
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 6.6e-07 59.7 259 23.9
Migut.M01976 Erythranthe guttata HOM05D002501 ORTHO05D002952 6.6e-07 59.7 104 31.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 6.6e-07 59.7 259 23.9
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.6
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.6
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-07 59.3 260 23.8
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.6
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 8.7e-07 59.3 260 23.8
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.6
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.6
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 8.7e-07 59.3 260 23.8
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.9
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 8.7e-07 59.3 259 23.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.1e-06 58.9 259 23.9
Hma1.2p1_0831F.1_g225280 Hydrangea macrophylla HOM05D002501 ORTHO05D002952 1.1e-06 58.9 221 24.4
Gorai.004G264000 Gossypium raimondii HOM05D002501 ORTHO05D002952 1.9e-06 58.2 219 22.4
THA.LOC104820844 Tarenaya hassleriana HOM05D002501 ORTHO05D002952 1.9e-06 58.2 224 26.3
Gohir.A08G227100 Gossypium hirsutum HOM05D002501 ORTHO05D002952 2.5e-06 57.8 219 22.4
Os04g0615100 Oryza sativa ssp. japonica HOM05D002501 ORTHO05D002952 4.3e-06 57.0 214 24.3
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 5.6e-06 56.6 244 23.0
Sc09g0001370 Simmondsia chinensis HOM05D002501 ORTHO05D002952 5.6e-06 56.6 120 30.0
Eucgr.K00007 Eucalyptus grandis HOM05D002501 ORTHO05D002952 7.3e-06 56.2 104 28.8
RcHm_v2.0_Chr3g0447541 Rosa chinensis HOM05D002501 ORTHO05D002952 7.3e-06 56.2 104 29.8
VMungo1383G2506 Vigna mungo HOM05D002501 ORTHO05D002952 9.6e-06 55.8 120 30.0


User provided reference genes

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