Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 0.0e+00 1173.3 620 100.0
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.6e-269 932.6 613 81.1
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 5.7e-267 924.1 626 78.8
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 6.2e-237 824.3 639 69.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 3.1e-236 822.0 660 66.1
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 4.6e-232 808.1 633 66.8
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 1.3e-231 806.6 633 67.0
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.1e-230 803.5 639 69.0
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.9e-230 802.7 634 66.9
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 4.3e-230 801.6 635 67.2
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 4.3e-230 801.6 635 67.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 4.3e-230 801.6 633 66.5
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 9.6e-230 800.4 650 65.5
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.6e-229 799.7 633 67.1
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.1e-229 799.3 632 66.6
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.8e-229 798.9 633 67.0
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.4e-228 796.6 646 66.7
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 8.9e-228 793.9 644 65.1
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.4e-227 792.0 634 66.9
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 3.4e-227 792.0 624 67.6
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 9.9e-227 790.4 634 66.9
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.7e-226 789.6 637 66.9
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 6.4e-226 787.7 624 67.1
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 2.4e-225 785.8 628 66.9
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.4e-225 784.6 623 66.3
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 5.4e-225 784.6 634 66.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.7e-224 782.3 623 66.1
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.7e-224 782.3 637 66.7
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 7.8e-224 780.8 628 67.0
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.3e-223 779.2 623 66.1
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.3e-223 779.2 634 66.2
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 3.9e-223 778.5 619 68.0
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.1e-223 778.1 623 65.8
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 6.6e-223 777.7 634 66.1
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 8.7e-223 777.3 635 65.7
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 8.7e-223 777.3 664 63.4
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.1e-222 776.9 623 68.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 3.3e-222 775.4 639 65.1
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 3.3e-222 775.4 639 65.1
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.3e-222 775.4 638 65.5
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 4.3e-222 775.0 634 66.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 5.6e-222 774.6 654 64.2
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.6e-222 774.6 650 64.5
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.6e-222 773.9 623 65.7
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.6e-221 773.1 626 66.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 8.1e-221 770.8 629 65.7
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.4e-220 770.0 632 65.2
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.8e-220 769.6 632 64.7
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 3.1e-220 768.8 638 67.6
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 4.0e-220 768.5 634 68.3
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.0e-220 767.3 625 67.7
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.5e-219 766.5 643 64.2
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 2.0e-219 766.1 620 66.8
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 7.6e-219 764.2 658 63.7
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.6e-219 764.2 638 64.4
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.3e-218 763.5 634 65.3
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 4.9e-218 761.5 640 64.5
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.1e-217 760.4 633 65.6
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.4e-217 760.0 635 66.5
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.1e-217 757.7 625 67.0
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 9.3e-217 757.3 649 62.4
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.7e-216 755.7 662 61.6
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 4.6e-216 755.0 623 64.8
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.6e-215 751.1 644 62.7
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 4.3e-214 748.4 632 63.4
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 4.3e-214 748.4 635 65.5
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.3e-214 747.7 628 65.3
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 7.3e-214 747.7 648 62.5
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.6e-213 746.5 628 65.3
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.8e-212 743.0 637 62.0
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 5.3e-212 741.5 661 61.4
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.2e-211 740.3 653 62.5
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.6e-211 739.2 632 61.4
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.6e-211 739.2 642 62.8
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 5.8e-211 738.0 629 65.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.3e-210 736.9 642 62.0
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.7e-210 736.5 637 63.1
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 4.9e-210 734.9 654 62.4
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 4.2e-209 731.9 651 61.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 5.4e-209 731.5 594 64.0
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 4.6e-208 728.4 761 55.5
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 6.0e-208 728.0 633 61.3
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 7.9e-208 727.6 631 64.7
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 7.9e-208 727.6 641 61.6
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.8e-207 726.5 633 62.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 3.0e-207 725.7 513 71.7
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 3.9e-207 725.3 638 61.8
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 5.1e-207 724.9 633 61.1
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.5e-206 722.6 634 62.6
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 7.4e-206 721.1 642 61.8
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.6e-205 719.9 584 66.8
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 2.1e-205 719.5 633 60.5
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.1e-205 719.5 633 61.0
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.1e-205 719.5 633 61.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.3e-204 714.9 628 63.5
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 1.0e-202 710.7 650 59.2
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.5e-201 706.1 634 62.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 4.2e-201 705.3 646 59.9
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.6e-200 701.8 621 63.9
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.0e-199 700.7 526 69.0
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 3.9e-199 698.7 634 62.5
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.4e-196 689.5 635 58.3
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 6.5e-194 681.4 563 63.1
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 4.2e-193 678.7 463 73.9
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.1e-192 674.9 627 58.1
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 6.1e-192 674.9 620 60.0
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.0e-191 672.5 493 69.2
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.0e-186 657.5 636 58.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.0e-186 655.2 682 56.2
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 8.2e-181 637.9 647 57.2
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-177 626.7 650 57.8
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 8.2e-173 611.3 642 54.2
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 9.1e-172 607.8 435 71.0
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 3.0e-167 592.8 628 53.7
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.2e-165 586.6 491 61.1
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 3.7e-165 585.9 540 58.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.6e-163 580.5 403 69.2
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.0e-162 577.8 468 63.7
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 1.3e-162 577.4 655 49.5
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 4.2e-161 572.4 645 49.8
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 7.2e-161 571.6 460 63.5
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 4.0e-159 565.8 368 75.0
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.6e-158 563.1 643 49.5
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.0e-150 537.0 635 50.9
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.1e-145 521.2 678 45.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 2.5e-145 520.0 321 79.4
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 7.8e-139 498.4 297 89.6
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.1e-137 494.6 306 78.4
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.5e-137 494.2 316 77.2
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 3.4e-126 456.4 318 70.4
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 9.2e-124 448.4 557 47.0
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.6e-120 437.6 304 69.7
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.6e-99 366.3 262 67.6
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.6e-99 366.3 262 67.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.2e-68 263.5 230 62.6
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.6e-57 227.6 349 38.7
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 6.3e-40 169.9 251 47.0
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 5.9e-38 163.3 109 83.5
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.1e-36 159.1 178 53.4
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 9.5e-36 156.0 173 54.9
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 8.3e-32 142.9 87 78.2
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.9e-29 134.4 207 47.3
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.5e-28 131.3 322 32.0
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.4e-25 120.9 334 31.7
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.5e-20 105.5 166 53.6
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.0e-17 95.1 105 49.5
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.5e-17 93.2 150 46.7
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 3.2e-15 87.8 150 44.0
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.6e-11 75.5 154 42.2
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.6e-09 68.2 148 38.5
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 7.1e-07 60.1 74 50.0


User provided reference genes

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