Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 5.7e-110 401.0 209 100.0
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 5.0e-66 255.0 183 76.0
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 9.9e-54 214.2 180 68.9
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 3.6e-48 195.7 183 62.8
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 8.1e-48 194.5 179 63.7
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.4e-47 193.0 187 62.6
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 2.6e-46 189.5 179 61.5
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 4.4e-46 188.7 172 61.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 4.4e-46 188.7 172 61.6
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 5.8e-46 188.3 179 60.9
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.2e-45 186.4 173 62.4
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.2e-45 186.4 182 61.5
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.9e-45 186.0 184 60.9
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 2.9e-45 186.0 179 59.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 4.9e-45 185.3 180 61.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 6.4e-45 184.9 179 62.6
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.9e-44 183.3 174 63.2
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 3.2e-44 182.6 179 57.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 9.2e-44 181.0 174 60.9
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 9.2e-44 181.0 187 56.7
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.6e-43 180.3 179 59.8
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 2.1e-43 179.9 182 58.8
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.1e-43 179.9 183 60.1
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 3.5e-43 179.1 177 61.0
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 3.5e-43 179.1 175 60.6
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 3.5e-43 179.1 183 57.4
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 7.8e-43 177.9 127 72.4
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.3e-42 177.2 179 59.2
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 3.0e-42 176.0 175 55.4
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 3.0e-42 176.0 183 57.9
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.1e-42 175.3 181 60.8
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 6.6e-42 174.9 176 59.1
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 6.6e-42 174.9 184 59.8
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 3.3e-41 172.6 171 57.9
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 3.3e-41 172.6 176 57.4
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 5.6e-41 171.8 121 72.7
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 7.3e-41 171.4 181 57.5
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 9.6e-41 171.0 173 57.8
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.6e-40 170.2 176 57.4
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.6e-40 170.2 176 56.8
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 3.6e-40 169.1 121 71.9
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.6e-40 169.1 193 53.4
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.8e-40 168.7 176 56.8
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 6.2e-40 168.3 123 73.2
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 6.2e-40 168.3 121 72.7
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 8.1e-40 167.9 179 56.4
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.1e-39 167.5 173 57.8
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.1e-39 167.5 174 56.3
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.1e-39 167.5 169 58.0
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.4e-39 166.4 174 55.2
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 3.1e-39 166.0 175 56.0
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.1e-39 166.0 178 56.2
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.0e-39 165.6 176 56.2
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 4.0e-39 165.6 170 58.2
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 5.3e-39 165.2 171 56.1
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 9.0e-39 164.5 179 55.3
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 9.0e-39 164.5 179 56.4
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.2e-38 164.1 172 57.0
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 1.5e-38 163.7 179 55.3
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 2.0e-38 163.3 169 58.0
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 2.6e-38 162.9 185 54.1
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 3.4e-38 162.5 178 53.9
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.4e-38 162.5 176 55.1
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 4.4e-38 162.2 186 54.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 9.9e-38 161.0 179 55.3
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 9.9e-38 161.0 179 55.3
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 9.9e-38 161.0 129 65.9
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.7e-37 160.2 172 55.8
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 2.2e-37 159.8 129 65.9
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 2.2e-37 159.8 174 55.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.2e-37 159.8 174 55.2
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 6.4e-37 158.3 179 53.6
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.1e-36 157.5 179 53.6
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.4e-36 157.1 177 54.2
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 3.2e-36 156.0 177 53.1
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 3.2e-36 156.0 175 54.9
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 3.2e-36 156.0 176 54.0
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 9.3e-36 154.5 179 54.7
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.2e-35 154.1 174 54.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.6e-35 153.7 178 52.2
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 2.1e-35 153.3 176 55.1
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.1e-35 153.3 227 45.8
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.7e-35 152.9 178 53.4
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 6.0e-35 151.8 192 50.5
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 7.8e-35 151.4 184 50.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.3e-34 150.6 196 50.0
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 3.0e-34 149.4 174 53.4
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 3.0e-34 149.4 174 53.4
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 3.0e-34 149.4 179 53.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-34 149.1 179 52.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.9e-34 149.1 178 52.8
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 6.6e-34 148.3 155 58.7
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 8.7e-34 147.9 174 52.9
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.9e-33 146.7 119 66.4
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 3.3e-33 146.0 121 64.5
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 5.6e-33 145.2 190 51.6
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 4.8e-32 142.1 182 48.9
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.2e-30 137.5 183 48.6
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.6e-30 136.3 166 53.0
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 5.8e-30 135.2 129 60.5
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 8.4e-29 131.3 186 47.3
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.4e-28 130.6 186 47.3
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 2.4e-28 129.8 180 47.2
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 5.4e-28 128.6 126 59.5
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 2.7e-27 126.3 171 47.4
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 2.7e-27 126.3 181 48.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.7e-27 126.3 94 70.2
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 3.0e-26 122.9 122 54.9
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.5e-25 120.6 125 56.8
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.5e-25 120.6 126 54.0
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.9e-25 120.2 242 39.7
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.5e-25 119.8 88 72.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.7e-24 115.9 121 59.5
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 6.2e-24 115.2 94 66.0
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 6.2e-24 115.2 122 54.9
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 4.0e-23 112.5 125 52.0
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.5e-22 110.5 122 54.1
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 4.5e-22 109.0 134 48.5
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 4.5e-22 109.0 125 52.0
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 6.5e-21 105.1 160 40.6
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.7e-19 99.8 175 46.3
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 1.0e-18 97.8 95 57.9
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.7e-17 92.0 153 38.6
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 8.2e-16 88.2 128 46.9
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 3.1e-15 86.3 97 50.5
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.6e-11 72.4 63 68.3
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.1e-11 72.0 81 51.9
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.0e-10 71.2 65 53.8
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 3.0e-10 69.7 74 55.4
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 3.0e-10 69.7 74 55.4
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.3e-08 64.3 140 36.4
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 1.6e-08 63.9 59 59.3
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.4e-07 60.8 97 40.2
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.1e-07 59.3 75 45.3
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.0e-05 54.7 66 50.0


User provided reference genes

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