Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.6e-125 450.7 222 100.0
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 1.5e-97 359.8 205 86.8
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 4.8e-91 338.2 206 82.5
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 5.0e-88 328.2 205 78.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 2.5e-87 325.9 205 78.0
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 9.4e-87 323.9 205 78.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 1.2e-86 323.6 205 78.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 2.7e-86 322.4 205 78.0
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 7.9e-86 320.9 203 75.9
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 1.0e-85 320.5 206 78.2
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.0e-85 320.5 205 78.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.8e-85 319.7 205 76.6
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 1.1e-84 317.0 205 76.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 1.1e-84 317.0 206 78.2
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 1.5e-84 316.6 206 77.7
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 2.0e-84 316.2 205 76.1
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 2.6e-84 315.8 205 77.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 2.6e-84 315.8 205 76.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.6e-84 315.8 205 76.6
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.6e-84 315.8 205 76.6
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 2.6e-84 315.8 207 78.3
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.3e-84 315.5 205 76.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.3e-84 315.5 205 76.6
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 3.3e-84 315.5 205 75.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 3.3e-84 315.5 205 76.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 4.4e-84 315.1 205 77.6
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 5.7e-84 314.7 205 77.1
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 7.4e-84 314.3 205 76.6
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 7.4e-84 314.3 207 75.8
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 9.7e-84 313.9 205 78.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 9.7e-84 313.9 205 77.1
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 2.8e-83 312.4 205 76.1
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 2.8e-83 312.4 205 76.1
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 6.3e-83 311.2 204 76.0
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 1.1e-82 310.5 205 78.0
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.4e-82 310.1 203 77.3
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 1.8e-82 309.7 206 74.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 1.8e-82 309.7 204 75.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.4e-82 309.3 200 77.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 2.4e-82 309.3 204 75.0
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 3.1e-82 308.9 205 75.1
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 3.1e-82 308.9 205 73.7
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 3.1e-82 308.9 205 76.1
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 4.1e-82 308.5 205 73.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 4.1e-82 308.5 206 76.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 5.3e-82 308.1 205 75.1
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 7.0e-82 307.8 205 74.6
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 9.1e-82 307.4 205 73.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 1.2e-81 307.0 205 75.6
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 1.2e-81 307.0 205 74.1
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.0e-81 306.2 205 74.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.6e-81 305.8 205 74.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.5e-81 305.4 204 74.0
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 3.5e-81 305.4 205 75.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 3.5e-81 305.4 207 75.4
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 4.5e-81 305.1 206 75.2
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 4.5e-81 305.1 206 74.3
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 7.7e-81 304.3 205 72.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 7.7e-81 304.3 204 73.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 1.0e-80 303.9 205 75.1
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 1.0e-80 303.9 207 74.9
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 1.3e-80 303.5 207 73.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 2.2e-80 302.8 205 73.2
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 2.2e-80 302.8 205 73.2
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.2e-80 302.8 205 71.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.0e-80 301.6 205 74.6
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 6.5e-80 301.2 205 74.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 6.5e-80 301.2 207 73.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 8.5e-80 300.8 205 73.7
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 8.5e-80 300.8 205 72.2
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 1.1e-79 300.4 205 74.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 1.1e-79 300.4 208 73.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 1.5e-79 300.1 205 73.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 1.5e-79 300.1 205 71.2
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 1.5e-79 300.1 205 71.2
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 1.5e-79 300.1 205 71.2
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 1.5e-79 300.1 203 74.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.9e-79 299.7 217 71.4
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 4.2e-79 298.5 217 71.4
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 5.5e-79 298.1 206 71.4
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 7.2e-79 297.7 205 72.2
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 7.2e-79 297.7 205 72.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.2e-78 297.0 203 72.9
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.6e-78 296.6 205 73.7
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.6e-78 296.6 205 73.7
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.1e-78 296.2 205 73.7
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 6.1e-78 294.7 203 71.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 8.0e-78 294.3 205 71.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.0e-77 293.9 208 72.6
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.4e-77 293.5 205 74.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.8e-77 293.1 205 74.1
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 2.3e-77 292.7 208 69.2
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 4.0e-77 292.0 205 71.2
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 4.0e-77 292.0 206 70.9
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 5.2e-77 291.6 205 73.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 6.7e-77 291.2 204 69.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 6.7e-77 291.2 206 72.8
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 6.7e-77 291.2 205 70.7
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 1.1e-76 290.4 205 68.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 1.5e-76 290.0 205 70.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 2.6e-76 289.3 207 72.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 2.6e-76 289.3 208 68.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 3.3e-76 288.9 211 67.8
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 4.4e-76 288.5 203 69.0
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 9.7e-76 287.3 211 68.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 9.7e-76 287.3 207 68.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 9.7e-76 287.3 206 71.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 1.7e-75 286.6 206 72.3
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.7e-75 286.6 206 70.9
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 2.8e-75 285.8 207 68.6
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 2.8e-75 285.8 207 68.1
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 4.8e-75 285.0 207 68.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.8e-74 283.1 203 71.4
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.3e-74 281.6 205 67.8
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 2.0e-73 279.6 218 66.5
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 2.0e-73 279.6 206 67.0
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 5.9e-73 278.1 193 71.0
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 5.9e-73 278.1 204 66.7
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.7e-73 277.7 203 69.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 1.0e-72 277.3 207 65.7
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 1.3e-72 276.9 204 68.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 1.7e-72 276.6 205 66.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 3.2e-71 272.3 206 64.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 4.2e-71 271.9 205 65.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 3.6e-70 268.9 206 68.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 8.8e-69 264.2 181 71.8
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 5.0e-64 248.4 202 63.4
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 4.2e-63 245.4 202 59.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 7.2e-63 244.6 202 59.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 7.5e-60 234.6 188 66.0
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 6.3e-59 231.5 210 58.1
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 7.5e-44 181.4 104 87.5
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.4e-42 177.2 197 49.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 3.0e-40 169.5 206 47.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 5.6e-31 138.7 202 43.6
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 2.1e-30 136.7 205 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.9e-23 113.6 202 37.1
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.6e-22 110.5 227 33.0
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.0e-20 103.6 83 67.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.6e-15 85.5 81 46.9
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 4.8e-06 55.8 42 57.1


User provided reference genes

Program Settings