Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278551 Helianthus annuus HOM05D002269 ORTHO05D002421 3.8e-54 214.5 106 100.0
HanXRQChr14g0441191 Helianthus annuus HOM05D002269 ORTHO05D002421 3.0e-30 135.2 93 78.5
ECA238G1153 Erigeron canadensis HOM05D002269 ORTHO05D002421 8.6e-22 107.1 90 65.6
Glyma.01G175900 Glycine max HOM05D002269 ORTHO05D002421 8.1e-20 100.5 102 57.8
arahy.Tifrunner.gnm1.ann1.HD9PWI Arachis hypogaea HOM05D002269 ORTHO05D002421 1.1e-19 100.1 90 62.2
COL.COLO4_22083 Corchorus olitorius HOM05D002269 ORTHO05D002421 1.1e-19 100.1 90 64.4
Sabra05G0101200 Salix brachista HOM05D002269 ORTHO05D002421 1.1e-19 100.1 89 61.8
vmacro17833 Vaccinium macrocarpon HOM05D002269 ORTHO05D002421 1.4e-19 99.8 95 60.0
arahy.Tifrunner.gnm1.ann1.BSFP8J Arachis hypogaea HOM05D002269 ORTHO05D002421 1.8e-19 99.4 90 62.2
THA.LOC104826743 Tarenaya hassleriana HOM05D002269 ORTHO05D002421 2.3e-19 99.0 91 61.5
CSS0046028 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 3.1e-19 98.6 90 62.2
Manes.01G135300 Manihot esculenta HOM05D002269 ORTHO05D002421 4.0e-19 98.2 90 61.1
ClCG07G009210 Citrullus lanatus HOM05D002269 ORTHO05D002421 5.2e-19 97.8 98 59.2
Sed0012954 Sechium edule HOM05D002269 ORTHO05D002421 6.8e-19 97.4 90 62.2
PGSC0003DMG400017791 Solanum tuberosum HOM05D002269 ORTHO05D002421 6.8e-19 97.4 90 61.1
ATR0733G085 Amborella trichopoda HOM05D002269 ORTHO05D002421 8.9e-19 97.1 93 60.2
CANSAT01G1943 Cannabis sativa HOM05D002269 ORTHO05D002421 1.2e-18 96.7 90 58.9
Glyma.11G068200 Glycine max HOM05D002269 ORTHO05D002421 1.2e-18 96.7 90 61.1
Potri.005G123100 Populus trichocarpa HOM05D002269 ORTHO05D002421 1.2e-18 96.7 90 58.9
Manes.02G093600 Manihot esculenta HOM05D002269 ORTHO05D002421 1.5e-18 96.3 90 60.0
Peaxi162Scf00751g00316 Petunia axillaris HOM05D002269 ORTHO05D002421 2.6e-18 95.5 90 62.2
Actinidia19185 Actinidia chinensis HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
MSTRG.23526 Avicennia marina HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
CiPaw.01G037800 Carya illinoinensis HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
Duzib187G1657 Durio zibethinus HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
Oeu012599.1 Olea europaea HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
Thecc.01G036100 Theobroma cacao HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
TWI73G0102 Tripterygium wilfordii HOM05D002269 ORTHO05D002421 4.4e-18 94.7 90 60.0
Duzib147G0060 Durio zibethinus HOM05D002269 ORTHO05D002421 5.8e-18 94.4 90 60.0
Gohir.A02G165100 Gossypium hirsutum HOM05D002269 ORTHO05D002421 5.8e-18 94.4 90 60.0
Gohir.D03G014900 Gossypium hirsutum HOM05D002269 ORTHO05D002421 5.8e-18 94.4 90 60.0
PGR119G1249 Punica granatum HOM05D002269 ORTHO05D002421 5.8e-18 94.4 90 60.0
Gorai.003G015200 Gossypium raimondii HOM05D002269 ORTHO05D002421 9.8e-18 93.6 90 60.0
Lj2g0019943 Lotus japonicus HOM05D002269 ORTHO05D002421 9.8e-18 93.6 90 62.2
SEGI_38161 Sequoiadendron giganteum HOM05D002269 ORTHO05D002421 9.8e-18 93.6 90 58.9
HPP92_001859 Vanilla planifolia HOM05D002269 ORTHO05D002421 9.8e-18 93.6 89 58.4
HPP92_001873 Vanilla planifolia HOM05D002269 ORTHO05D002421 9.8e-18 93.6 89 58.4
Carub.0005s1723 Capsella rubella HOM05D002269 ORTHO05D002421 1.3e-17 93.2 90 57.8
Migut.H00993 Erythranthe guttata HOM05D002269 ORTHO05D002421 1.7e-17 92.8 90 60.0
Rhsim08G0117000 Rhododendron simsii HOM05D002269 ORTHO05D002421 2.2e-17 92.4 90 60.0
TPR.G22284 Trifolium pratense HOM05D002269 ORTHO05D002421 2.2e-17 92.4 90 57.8
Hma1.2p1_0224F.1_g094670 Hydrangea macrophylla HOM05D002269 ORTHO05D002421 3.7e-17 91.7 90 57.8
Thhalv10010765m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 4.9e-17 91.3 92 59.8
Sp5g11370 Schrenkiella parvula HOM05D002269 ORTHO05D002421 8.3e-17 90.5 90 58.9
VMungo1215G0252 Vigna mungo HOM05D002269 ORTHO05D002421 3.2e-16 88.6 90 56.7
A09p43950 Brassica napus HOM05D002269 ORTHO05D002421 4.1e-16 88.2 90 57.8
AL5G31180 Arabidopsis lyrata HOM05D002269 ORTHO05D002421 7.1e-16 87.4 90 54.4
CARHR160390 Cardamine hirsuta HOM05D002269 ORTHO05D002421 7.1e-16 87.4 91 54.9
TAR628G1697 Trochodendron aralioides HOM05D002269 ORTHO05D002421 9.2e-16 87.0 90 56.7
Cc07_g09510 Coffea canephora HOM05D002269 ORTHO05D002421 6.0e-15 84.3 91 54.9
MELO3C017563.2 Cucumis melo HOM05D002269 ORTHO05D002421 6.0e-15 84.3 108 50.0
Nitab4.5_0001038g0030 Nicotiana tabacum HOM05D002269 ORTHO05D002421 6.0e-15 84.3 90 58.9
SalBow1G4221 Salvia bowleyana HOM05D002269 ORTHO05D002421 1.7e-14 82.8 90 55.6
Haze_15091 Corylus avellana HOM05D002269 ORTHO05D002421 2.3e-14 82.4 90 56.7
AT3G50845 Arabidopsis thaliana HOM05D002269 ORTHO05D002421 3.0e-14 82.0 90 51.1
MBI16_g31003_MAGBIO Magnolia biondii HOM05D002269 ORTHO05D002421 5.1e-14 81.3 90 55.6
Zm00001eb059210 Zea mays HOM05D002269 ORTHO05D002421 6.6e-14 80.9 89 48.3
BraA09t39852Z Brassica rapa HOM05D002269 ORTHO05D002421 8.6e-14 80.5 90 56.7
A02p14860 Brassica napus HOM05D002269 ORTHO05D002421 1.1e-13 80.1 85 49.4
BraA02t06553Z Brassica rapa HOM05D002269 ORTHO05D002421 1.1e-13 80.1 85 49.4
C02p24310 Brassica napus HOM05D002269 ORTHO05D002421 1.5e-13 79.7 85 49.4
BolC2t08543H Brassica oleracea HOM05D002269 ORTHO05D002421 1.5e-13 79.7 85 49.4
BolC8t50223H Brassica oleracea HOM05D002269 ORTHO05D002421 1.9e-13 79.3 90 52.2
BcaB01g00574 Brassica carinata HOM05D002269 ORTHO05D002421 1.2e-12 76.6 90 52.2
BcaB01g00575 Brassica carinata HOM05D002269 ORTHO05D002421 1.2e-12 76.6 90 50.0
Zm00001eb430080 Zea mays HOM05D002269 ORTHO05D002421 1.2e-12 76.6 85 47.1
BcaC07g39549 Brassica carinata HOM05D002269 ORTHO05D002421 2.1e-12 75.9 90 48.9
Os04g0596400 Oryza sativa ssp. japonica HOM05D002269 ORTHO05D002421 3.6e-12 75.1 89 42.7
CSS0004410 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 8.1e-12 73.9 85 47.1
CSS0015281 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 8.1e-12 73.9 85 47.1
CSS0035166 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 8.1e-12 73.9 85 48.2
Zm00001eb072050 Zea mays HOM05D002269 ORTHO05D002421 8.1e-12 73.9 85 45.9
BcaB05g24362 Brassica carinata HOM05D002269 ORTHO05D002421 1.1e-11 73.6 87 48.3
CSS0042614 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.8e-11 72.8 88 47.7
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.3e-11 72.4 60 66.7
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.3e-11 72.4 60 66.7
Hund14382 Selenicereus undatus HOM05D002269 ORTHO05D002421 2.3e-11 72.4 104 41.3
CSS0009442 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 3.1e-11 72.0 87 47.1
TWI60G0852 Tripterygium wilfordii HOM05D002269 ORTHO05D002421 3.1e-11 72.0 85 42.4
PGR031G3026 Punica granatum HOM05D002269 ORTHO05D002421 4.0e-11 71.6 84 45.2
BcaC08g46265 Brassica carinata HOM05D002269 ORTHO05D002421 5.2e-11 71.2 94 43.6
Sp5g23360 Schrenkiella parvula HOM05D002269 ORTHO05D002421 5.2e-11 71.2 84 42.9
Nn1g01855 Nelumbo nucifera HOM05D002269 ORTHO05D002421 6.8e-11 70.9 89 41.6
SEGI_25839 Sequoiadendron giganteum HOM05D002269 ORTHO05D002421 6.8e-11 70.9 89 46.1
CARHR060990 Cardamine hirsuta HOM05D002269 ORTHO05D002421 8.9e-11 70.5 89 41.6
Thhalv10019265m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 1.2e-10 70.1 85 42.4
Gohir.D07G127100 Gossypium hirsutum HOM05D002269 ORTHO05D002421 1.2e-10 70.1 85 45.9
Manes.03G078116 Manihot esculenta HOM05D002269 ORTHO05D002421 1.2e-10 70.1 88 48.9
Oeu017090.1 Olea europaea HOM05D002269 ORTHO05D002421 1.2e-10 70.1 92 43.5
PSO170G1543 Papaver somniferum HOM05D002269 ORTHO05D002421 1.5e-10 69.7 92 43.5
Pp3c1_13120 Physcomitrium patens HOM05D002269 ORTHO05D002421 2.0e-10 69.3 84 51.2
THA.LOC104821912 Tarenaya hassleriana HOM05D002269 ORTHO05D002421 2.0e-10 69.3 85 43.5
BcaC08g46264 Brassica carinata HOM05D002269 ORTHO05D002421 2.6e-10 68.9 94 42.6
Haze_08132 Corylus avellana HOM05D002269 ORTHO05D002421 2.6e-10 68.9 91 46.2
Eucgr.I02444 Eucalyptus grandis HOM05D002269 ORTHO05D002421 2.6e-10 68.9 90 47.8
A07p34720 Brassica napus HOM05D002269 ORTHO05D002421 3.4e-10 68.6 89 44.9
Migut.E01321 Erythranthe guttata HOM05D002269 ORTHO05D002421 3.4e-10 68.6 84 42.9
Mapoly0166s0021 Marchantia polymorpha HOM05D002269 ORTHO05D002421 3.4e-10 68.6 89 47.2
PSO017G3942 Papaver somniferum HOM05D002269 ORTHO05D002421 3.4e-10 68.6 92 42.4
Potri.001G135800 Populus trichocarpa HOM05D002269 ORTHO05D002421 4.4e-10 68.2 91 39.6
Ciclev10027433m.g Citrus clementina HOM05D002269 ORTHO05D002421 5.8e-10 67.8 90 46.7
PGSC0003DMG402009322 Solanum tuberosum HOM05D002269 ORTHO05D002421 5.8e-10 67.8 85 42.4
Atru.chr3.570 Acer truncatum HOM05D002269 ORTHO05D002421 7.6e-10 67.4 44 81.8
Aqoxy2G02906 Aquilegia oxysepala HOM05D002269 ORTHO05D002421 7.6e-10 67.4 91 40.7
BcaB03g15102 Brassica carinata HOM05D002269 ORTHO05D002421 7.6e-10 67.4 95 42.1
BcaC08g46262 Brassica carinata HOM05D002269 ORTHO05D002421 7.6e-10 67.4 84 47.6
Duzib168G0037 Durio zibethinus HOM05D002269 ORTHO05D002421 7.6e-10 67.4 85 43.5
Phvul.002G135400 Phaseolus vulgaris HOM05D002269 ORTHO05D002421 1.3e-09 66.6 86 41.9
BcaB03g15099 Brassica carinata HOM05D002269 ORTHO05D002421 1.7e-09 66.2 95 42.1
ClCG09G011580 Citrullus lanatus HOM05D002269 ORTHO05D002421 1.7e-09 66.2 90 43.3
Medtr5g020120 Medicago truncatula HOM05D002269 ORTHO05D002421 1.7e-09 66.2 90 45.6
Sabra03G0066400 Salix brachista HOM05D002269 ORTHO05D002421 1.7e-09 66.2 93 43.0
Sed0000806 Sechium edule HOM05D002269 ORTHO05D002421 1.7e-09 66.2 89 43.8
Eucgr.D02638 Eucalyptus grandis HOM05D002269 ORTHO05D002421 2.2e-09 65.9 84 42.9
Nitab4.5_0006977g0020 Nicotiana tabacum HOM05D002269 ORTHO05D002421 2.2e-09 65.9 105 39.0
TAR636G2740 Trochodendron aralioides HOM05D002269 ORTHO05D002421 2.2e-09 65.9 96 39.6
arahy.Tifrunner.gnm1.ann1.988I9X Arachis hypogaea HOM05D002269 ORTHO05D002421 2.9e-09 65.5 98 42.9
arahy.Tifrunner.gnm1.ann1.E7GDE8 Arachis hypogaea HOM05D002269 ORTHO05D002421 2.9e-09 65.5 98 42.9
Potri.003G098000 Populus trichocarpa HOM05D002269 ORTHO05D002421 2.9e-09 65.5 85 41.2
Solyc08g076120.3 Solanum lycopersicum HOM05D002269 ORTHO05D002421 2.9e-09 65.5 85 41.2
BolC6t39257H Brassica oleracea HOM05D002269 ORTHO05D002421 3.8e-09 65.1 110 40.9
Rhsim02G0002300 Rhododendron simsii HOM05D002269 ORTHO05D002421 4.9e-09 64.7 88 45.5
Rhsim11G0031700 Rhododendron simsii HOM05D002269 ORTHO05D002421 4.9e-09 64.7 88 45.5
Ca_25162_v3 Cicer arietinum L. HOM05D002269 ORTHO05D002421 6.4e-09 64.3 86 41.9
FAN18G0490 Fragaria x ananassa HOM05D002269 ORTHO05D002421 6.4e-09 64.3 84 41.7
FAN28G2695 Fragaria x ananassa HOM05D002269 ORTHO05D002421 6.4e-09 64.3 34 91.2
Nitab4.5_0002897g0010 Nicotiana tabacum HOM05D002269 ORTHO05D002421 6.4e-09 64.3 85 42.4
Psat2g139840 Pisum sativum HOM05D002269 ORTHO05D002421 6.4e-09 64.3 86 39.5
QL04p055157 Quercus lobata HOM05D002269 ORTHO05D002421 6.4e-09 64.3 113 38.1
Sopen03g006820 Solanum pennellii HOM05D002269 ORTHO05D002421 8.4e-09 63.9 34 91.2
C08p26050 Brassica napus HOM05D002269 ORTHO05D002421 1.4e-08 63.2 90 44.4
CSS0022027 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.4e-08 63.2 103 37.9
Ciclev10002744m.g Citrus clementina HOM05D002269 ORTHO05D002421 1.4e-08 63.2 86 41.9
Aqoxy6G01106 Aquilegia oxysepala HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
FvH4_1g13320 Fragaria vesca HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
FAN19G3136 Fragaria x ananassa HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
FAN23G0991 Fragaria x ananassa HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
FAN26G1254 Fragaria x ananassa HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
RcHm_v2.0_Chr2g0101601 Rosa chinensis HOM05D002269 ORTHO05D002421 1.9e-08 62.8 34 88.2
vmacro00264 Vaccinium macrocarpon HOM05D002269 ORTHO05D002421 1.9e-08 62.8 103 38.8
ECA246G1747 Erigeron canadensis HOM05D002269 ORTHO05D002421 2.4e-08 62.4 87 44.8
Prupe.1G100200 Prunus persica HOM05D002269 ORTHO05D002421 2.4e-08 62.4 88 44.3
QL06p046060 Quercus lobata HOM05D002269 ORTHO05D002421 2.4e-08 62.4 33 90.9
Atru.chr12.1227 Acer truncatum HOM05D002269 ORTHO05D002421 3.2e-08 62.0 89 39.3
C06p41690 Brassica napus HOM05D002269 ORTHO05D002421 3.2e-08 62.0 95 41.1
CiPaw.12G069300 Carya illinoinensis HOM05D002269 ORTHO05D002421 3.2e-08 62.0 85 43.5
DCAR_011304 Daucus carota HOM05D002269 ORTHO05D002421 3.2e-08 62.0 85 42.4
DCAR_028251 Daucus carota HOM05D002269 ORTHO05D002421 3.2e-08 62.0 85 43.5
Os03g0775500 Oryza sativa ssp. japonica HOM05D002269 ORTHO05D002421 3.2e-08 62.0 89 41.6
SMO147G0338 Selaginella moellendorffii HOM05D002269 ORTHO05D002421 3.2e-08 62.0 85 42.4
Carub.0002s1480 Capsella rubella HOM05D002269 ORTHO05D002421 4.1e-08 61.6 85 40.0
AUR62007564 Chenopodium quinoa HOM05D002269 ORTHO05D002421 4.1e-08 61.6 45 73.3
Prupe.6G151700 Prunus persica HOM05D002269 ORTHO05D002421 4.1e-08 61.6 85 41.2
Medtr5g028010 Medicago truncatula HOM05D002269 ORTHO05D002421 5.4e-08 61.2 86 38.4
ECA246G1284 Erigeron canadensis HOM05D002269 ORTHO05D002421 7.1e-08 60.8 87 43.7
PSO339G0652 Papaver somniferum HOM05D002269 ORTHO05D002421 7.1e-08 60.8 93 36.6
Dinv39985 Davidia involucrata HOM05D002269 ORTHO05D002421 9.2e-08 60.5 32 90.6
Glyma.01G012300 Glycine max HOM05D002269 ORTHO05D002421 9.2e-08 60.5 87 39.1
Glyma.09G209300 Glycine max HOM05D002269 ORTHO05D002421 9.2e-08 60.5 85 41.2
Lsat_1_v5_gn_3_21081 Lactuca sativa HOM05D002269 ORTHO05D002421 9.2e-08 60.5 87 41.4
GSVIVG01018962001 Vitis vinifera HOM05D002269 ORTHO05D002421 9.2e-08 60.5 32 90.6
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.2e-07 60.1 89 43.8
FAN04G1675 Fragaria x ananassa HOM05D002269 ORTHO05D002421 1.2e-07 60.1 84 40.5
PSO384G0030 Papaver somniferum HOM05D002269 ORTHO05D002421 1.2e-07 60.1 84 40.5
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.1e-07 59.3 34 82.4
Prupe.7G154400 Prunus persica HOM05D002269 ORTHO05D002421 2.1e-07 59.3 32 87.5
A07p32060 Brassica napus HOM05D002269 ORTHO05D002421 2.7e-07 58.9 88 43.2
BraA07t30836Z Brassica rapa HOM05D002269 ORTHO05D002421 2.7e-07 58.9 88 43.2
CBR_g8582 Chara braunii HOM05D002269 ORTHO05D002421 2.7e-07 58.9 84 42.9
Dinv29016 Davidia involucrata HOM05D002269 ORTHO05D002421 2.7e-07 58.9 85 40.0
AT1G68310 Arabidopsis thaliana HOM05D002269 ORTHO05D002421 3.5e-07 58.5 85 38.8
Cre11.g479700 Chlamydomonas reinhardtii HOM05D002269 ORTHO05D002421 4.6e-07 58.2 87 40.2
MD15G1262100 Malus domestica HOM05D002269 ORTHO05D002421 7.8e-07 57.4 46 63.0
Lj2A761T4 Lonicera japonica HOM05D002269 ORTHO05D002421 1.3e-06 56.6 94 37.2
Lj2g0001997 Lotus japonicus HOM05D002269 ORTHO05D002421 1.3e-06 56.6 86 37.2
Lalb_Chr16g0377841 Lupinus albus HOM05D002269 ORTHO05D002421 1.3e-06 56.6 32 84.4
PSO675G7689 Papaver somniferum HOM05D002269 ORTHO05D002421 1.3e-06 56.6 92 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3441 Anthoceros agrestis HOM05D002269 ORTHO05D002421 1.7e-06 56.2 83 38.6
MD02G1147900 Malus domestica HOM05D002269 ORTHO05D002421 1.7e-06 56.2 45 64.4
Lju158C4T3 Lonicera japonica HOM05D002269 ORTHO05D002421 2.3e-06 55.8 89 38.2
VMungo1215G2447 Vigna mungo HOM05D002269 ORTHO05D002421 3.0e-06 55.5 85 38.8
AagrBONN_evm.TU.Sc2ySwM_228.147 Anthoceros agrestis HOM05D002269 ORTHO05D002421 3.9e-06 55.1 83 36.1
CDE11G1138 Ceratophyllum demersum HOM05D002269 ORTHO05D002421 3.9e-06 55.1 85 37.6
Haze_12063 Corylus avellana HOM05D002269 ORTHO05D002421 3.9e-06 55.1 89 39.3
MD03G1162900 Malus domestica HOM05D002269 ORTHO05D002421 3.9e-06 55.1 88 40.9
C06p37740 Brassica napus HOM05D002269 ORTHO05D002421 6.6e-06 54.3 88 43.2
BolC6t38877H Brassica oleracea HOM05D002269 ORTHO05D002421 6.6e-06 54.3 88 43.2


User provided reference genes

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