Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 5.0e-168 594.3 299 100.0
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 5.6e-111 404.8 323 69.3
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 1.2e-89 334.0 285 61.1
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 3.0e-88 329.3 277 61.7
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 1.5e-87 327.0 308 59.1
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 7.4e-87 324.7 285 60.4
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.8e-86 322.8 310 57.7
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 3.7e-86 322.4 270 60.4
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 8.2e-86 321.2 311 57.6
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 8.2e-86 321.2 311 56.9
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 5.3e-85 318.5 254 64.6
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 6.9e-85 318.2 284 58.1
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.5e-84 315.5 288 58.7
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 4.5e-84 315.5 276 60.9
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 1.3e-83 313.9 297 56.9
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.7e-83 313.5 305 55.4
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 5.0e-83 312.0 312 53.8
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 5.0e-83 312.0 288 58.7
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 5.0e-83 312.0 259 60.2
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 6.5e-83 311.6 307 56.4
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 1.4e-82 310.5 273 58.2
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.4e-82 310.5 255 61.2
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.9e-82 310.1 295 57.6
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.9e-82 310.1 301 54.5
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 3.2e-82 309.3 317 54.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 5.5e-82 308.5 317 54.3
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.6e-81 307.0 314 53.2
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.6e-81 307.0 277 57.0
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 4.7e-81 305.4 234 65.8
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.0e-80 304.3 254 61.4
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 3.0e-80 302.8 284 57.4
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 3.0e-80 302.8 253 60.9
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 3.9e-80 302.4 299 54.2
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 8.8e-80 301.2 311 54.3
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 1.1e-79 300.8 312 54.5
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.1e-79 300.8 322 52.2
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 1.5e-79 300.4 299 55.2
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 1.5e-79 300.4 257 60.7
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.5e-79 300.4 253 60.5
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.0e-79 300.1 316 53.8
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 3.3e-79 299.3 299 53.5
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 4.4e-79 298.9 304 53.6
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 4.4e-79 298.9 287 55.1
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 4.4e-79 298.9 320 52.5
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 7.4e-79 298.1 254 58.3
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 9.7e-79 297.7 302 53.0
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 9.7e-79 297.7 302 53.0
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 9.7e-79 297.7 295 56.3
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 1.3e-78 297.4 276 58.0
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.3e-78 297.4 308 53.2
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 2.8e-78 296.2 304 53.9
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 2.8e-78 296.2 242 63.2
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 2.8e-78 296.2 286 55.9
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 4.8e-78 295.4 300 54.0
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 4.8e-78 295.4 306 54.2
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 4.8e-78 295.4 295 53.9
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 4.8e-78 295.4 315 52.7
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 4.8e-78 295.4 318 53.1
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 6.3e-78 295.0 308 52.9
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 6.3e-78 295.0 308 52.9
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 8.2e-78 294.7 278 55.8
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 1.4e-77 293.9 300 53.7
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 1.8e-77 293.5 313 54.6
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 4.1e-77 292.4 302 53.3
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 5.3e-77 292.0 314 51.9
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 7.0e-77 291.6 300 57.3
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 9.1e-77 291.2 307 52.8
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 1.2e-76 290.8 303 53.5
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.2e-76 290.8 319 52.7
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.5e-76 290.4 280 55.0
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.5e-76 290.4 322 51.9
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 1.5e-76 290.4 275 56.0
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 2.6e-76 289.7 306 53.9
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 3.5e-76 289.3 289 52.2
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 4.5e-76 288.9 272 57.7
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 4.5e-76 288.9 284 55.3
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 5.9e-76 288.5 316 52.5
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.0e-75 287.7 319 52.4
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.0e-75 287.7 319 52.4
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.3e-75 287.3 276 54.7
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 3.8e-75 285.8 280 54.6
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 5.0e-75 285.4 276 54.7
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 6.5e-75 285.0 272 54.8
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 8.5e-75 284.6 301 53.5
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 1.1e-74 284.3 278 54.7
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 2.5e-74 283.1 283 54.1
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 4.2e-74 282.3 284 55.6
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 8.0e-73 278.1 307 51.1
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 5.7e-71 271.9 298 49.0
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 7.4e-71 271.6 285 52.6
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.7e-70 270.4 207 63.8
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 2.8e-70 269.6 367 44.7
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 4.8e-70 268.9 296 50.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.1e-69 266.2 223 58.7
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 9.1e-69 264.6 281 51.2
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 9.1e-69 264.6 312 46.2
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 3.5e-68 262.7 243 56.4
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.7e-67 260.4 423 41.1
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.4e-64 250.8 242 50.8
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 4.5e-60 235.7 157 69.4
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 7.2e-58 228.4 260 48.1
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.8e-56 223.8 295 42.4
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 3.3e-50 203.0 212 54.7
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 5.5e-50 202.2 274 42.0
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 6.8e-48 195.3 289 42.2
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.2e-47 194.5 135 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 6.3e-46 188.7 245 40.4
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.7e-44 183.3 250 41.2
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 2.3e-43 180.3 216 48.6
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.4e-32 144.4 200 45.0
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 2.0e-31 140.6 91 69.2
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 2.7e-28 130.2 143 42.7
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 2.5e-26 123.6 90 58.9
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 8.9e-24 115.2 74 67.6
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 2.0e-23 114.0 257 29.2
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 2.6e-23 113.6 74 67.6
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 1.6e-20 104.4 115 41.7
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 2.1e-20 104.0 163 36.2
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.7e-19 100.9 134 50.0
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 1.7e-19 100.9 134 50.7
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 8.6e-19 98.6 129 42.6
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.2e-17 94.7 128 47.7
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.8e-16 90.9 132 49.2
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 9.9e-15 85.1 133 45.9
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 2.4e-13 80.5 83 41.0
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 3.2e-13 80.1 240 27.1
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 5.4e-13 79.3 114 49.1
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 9.2e-13 78.6 100 41.0
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 4.3e-10 69.7 127 37.8
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 9.6e-10 68.6 81 56.8
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-09 68.2 81 55.6
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-08 65.1 95 49.5
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.4e-08 64.7 77 54.5
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 2.4e-08 63.9 235 29.4
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 9.0e-08 62.0 77 53.2
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 5.8e-07 59.3 50 66.0
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 9.9e-07 58.5 254 27.2
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 2.9e-06 57.0 310 24.5
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 2.9e-06 57.0 288 24.7
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 3.8e-06 56.6 252 26.2
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 4.9e-06 56.2 92 43.5


User provided reference genes

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