Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.3e-100 369.0 197 100.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 6.1e-29 131.7 79 83.5
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.7e-26 123.6 83 83.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 7.7e-16 88.2 70 62.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 4.2e-14 82.4 78 55.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.6e-13 80.5 68 55.9
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.1e-13 80.1 80 55.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.7e-13 79.7 72 55.6
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.7e-13 79.7 153 41.2
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.6e-13 79.3 68 54.4
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.6e-13 79.3 68 54.4
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.6e-13 79.3 78 55.1
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.7e-13 79.0 80 53.8
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.7e-13 79.0 73 54.8
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 6.1e-13 78.6 83 54.2
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.1e-13 78.6 80 52.5
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.0e-12 77.8 80 55.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-12 77.8 71 56.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.0e-12 77.8 90 50.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.0e-12 77.8 79 53.2
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.4e-12 77.4 81 50.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.8e-12 77.0 79 51.9
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.3e-12 76.6 72 54.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.3e-12 76.6 71 53.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.3e-12 76.6 65 58.5
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.0e-12 76.3 76 53.9
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 3.9e-12 75.9 80 55.0
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.9e-12 75.9 66 57.6
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.2e-12 75.5 68 52.9
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 5.2e-12 75.5 74 52.7
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.7e-12 75.1 72 52.8
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.7e-12 75.1 79 49.4
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 6.7e-12 75.1 56 62.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 8.8e-12 74.7 193 33.7
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 8.8e-12 74.7 79 53.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-11 74.3 81 56.8
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.1e-11 74.3 69 55.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.1e-11 74.3 163 38.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.1e-11 74.3 78 52.6
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.5e-11 73.9 86 48.8
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.5e-11 73.9 77 50.6
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.5e-11 73.9 72 55.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 2.0e-11 73.6 79 48.1
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.0e-11 73.6 72 55.6
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.0e-11 73.6 76 52.6
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.0e-11 73.6 82 52.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.0e-11 73.6 82 52.4
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.0e-11 73.6 82 52.4
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-11 73.6 87 52.9
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.6e-11 73.2 176 35.8
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.6e-11 73.2 65 55.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.6e-11 73.2 65 55.4
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.6e-11 73.2 78 51.3
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.6e-11 73.2 80 53.8
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.6e-11 73.2 76 55.3
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 3.3e-11 72.8 76 51.3
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.3e-11 72.8 79 48.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.3e-11 72.8 79 48.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.4e-11 72.4 69 52.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 4.4e-11 72.4 66 56.1
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.4e-11 72.4 71 52.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.4e-11 72.4 55 65.5
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 5.7e-11 72.0 79 49.4
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 5.7e-11 72.0 75 54.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 9.7e-11 71.2 74 48.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.3e-10 70.9 56 57.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-10 70.5 77 50.6
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-10 70.5 77 50.6
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.7e-10 70.5 80 53.8
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.7e-10 70.5 74 51.4
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.2e-10 70.1 80 52.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-10 70.1 77 50.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.2e-10 70.1 148 36.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.2e-10 70.1 89 46.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.2e-10 70.1 76 48.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-10 69.7 71 49.3
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-10 69.7 71 49.3
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.8e-10 69.7 71 49.3
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.8e-10 69.7 72 52.8
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.8e-10 69.7 81 50.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.7e-10 69.3 114 40.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.7e-10 69.3 71 49.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.7e-10 69.3 80 51.2
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.7e-10 69.3 78 48.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.8e-10 68.9 86 45.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.3e-10 68.6 65 53.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 6.3e-10 68.6 80 47.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.3e-10 68.6 57 59.6
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 6.3e-10 68.6 78 46.2
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 8.2e-10 68.2 74 51.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.1e-09 67.8 65 53.8
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-09 67.8 77 48.1
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.1e-09 67.8 81 50.6
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.1e-09 67.8 79 49.4
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.4e-09 67.4 56 57.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-09 67.4 78 48.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.4e-09 67.4 79 46.8
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.8e-09 67.0 75 48.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.8e-09 67.0 78 48.7
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.8e-09 67.0 56 55.4
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.4e-09 66.6 76 47.4
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.4e-09 66.6 76 47.4
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.4e-09 66.6 59 52.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-09 66.6 75 48.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.4e-09 66.6 79 49.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.4e-09 66.6 68 50.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.1e-09 66.2 77 46.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.1e-09 66.2 53 60.4
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.1e-09 65.9 54 57.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 5.3e-09 65.5 72 48.6
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.3e-09 65.5 72 48.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 7.0e-09 65.1 62 56.5
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.0e-09 65.1 78 47.4
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 7.0e-09 65.1 76 47.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 9.1e-09 64.7 73 47.9
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.2e-08 64.3 79 46.8
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-08 64.3 72 48.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-08 64.3 72 48.6
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.6e-08 63.9 68 48.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.0e-08 63.5 62 54.8
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.6e-08 63.2 84 44.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-08 62.8 57 52.6
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 4.5e-08 62.4 74 52.7
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 5.9e-08 62.0 70 48.6
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 2.2e-07 60.1 166 32.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.8e-07 59.3 71 49.3
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.8e-07 59.3 66 50.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.8e-07 59.3 77 42.9
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 5.0e-07 58.9 74 44.6
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.5e-07 58.2 92 43.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 8.5e-07 58.2 54 48.1
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 8.5e-07 58.2 92 40.2
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-06 57.8 59 50.8
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.9e-06 57.0 65 49.2
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.9e-06 57.0 70 42.9
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.2e-06 56.2 56 41.1
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.2e-06 55.8 98 36.7
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 5.5e-06 55.5 76 38.2
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.5e-06 55.5 57 52.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 5.5e-06 55.5 62 45.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 9.4e-06 54.7 94 36.2


User provided reference genes

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