Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 0.0e+00 1974.9 1070 100.0
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 0.0e+00 1132.9 1155 63.4
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.3e-308 1062.4 1117 63.5
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 3.3e-302 1042.0 1091 64.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 3.2e-193 679.9 1222 45.8
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 2.2e-181 640.6 1248 44.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.4e-172 611.3 1290 42.3
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 8.1e-168 595.5 1241 43.3
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.2e-166 591.7 1237 43.5
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.7e-162 577.8 1249 42.0
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 3.0e-162 577.0 1245 42.2
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.5e-161 574.7 1263 41.5
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 7.3e-161 572.4 1229 41.6
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.2e-160 571.6 1244 41.6
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.6e-160 571.2 1235 42.3
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 8.1e-160 568.9 1236 40.8
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 2.3e-159 567.4 1227 42.6
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 9.9e-158 562.0 1232 42.8
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.7e-157 561.2 1243 42.2
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 4.9e-157 559.7 1221 41.9
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 4.9e-157 559.7 1278 40.6
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.1e-156 558.5 1197 42.7
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 2.4e-156 557.4 1197 42.6
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 1.2e-155 555.1 1259 41.2
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 7.8e-155 552.4 1260 39.1
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 5.1e-154 549.7 1187 41.9
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 8.6e-154 548.9 1255 39.7
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.8e-152 543.9 1247 40.8
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 3.6e-152 543.5 1236 41.3
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 4.7e-152 543.1 1203 38.7
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 8.1e-152 542.3 1245 40.9
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 5.2e-151 539.7 1240 40.0
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 8.9e-151 538.9 1225 41.6
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 9.9e-150 535.4 1246 40.9
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 2.2e-149 534.3 1230 41.1
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 2.9e-149 533.9 1255 40.4
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.9e-148 531.2 1245 39.8
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 5.4e-148 529.6 1268 40.4
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 7.1e-148 529.3 1203 40.9
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.0e-146 525.4 1216 40.6
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 3.9e-146 523.5 1242 39.8
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 5.1e-146 523.1 1253 39.5
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 2.5e-145 520.8 1254 37.2
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 5.6e-145 519.6 1235 40.1
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 5.6e-145 519.6 1250 39.8
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 4.8e-144 516.5 1259 38.4
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 8.1e-144 515.8 1240 39.2
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 8.1e-144 515.8 1237 40.7
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 4.9e-141 506.5 1224 39.9
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.4e-140 505.0 1193 40.8
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.6e-139 501.5 1247 38.1
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.0e-138 498.8 1254 39.7
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.5e-134 485.0 1085 41.7
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.9e-133 479.9 1131 39.9
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 5.5e-132 476.5 1265 37.7
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 9.3e-132 475.7 1235 37.8
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 8.7e-130 469.2 1153 38.8
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 4.3e-129 466.8 1148 38.6
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.6e-128 464.9 1131 40.0
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 6.2e-128 463.0 1234 37.8
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 6.9e-127 459.5 1201 37.6
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 6.9e-127 459.5 1259 38.1
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 2.5e-124 451.1 1173 36.2
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.6e-123 446.8 1226 39.6
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 1.3e-122 445.3 1198 39.5
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.8e-122 444.9 1158 38.4
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.8e-122 444.9 1393 35.6
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.0e-122 444.1 1029 42.0
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.1e-122 443.4 1286 35.0
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 8.7e-122 442.6 1276 37.1
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 2.5e-121 441.0 1221 37.8
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 9.6e-121 439.1 1166 38.8
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 8.2e-120 436.0 1237 36.4
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.4e-119 435.3 1240 37.5
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.1e-116 425.6 1089 39.1
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.4e-116 425.2 1275 34.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 8.2e-112 409.5 1168 37.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.2e-110 405.6 1178 36.3
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.5e-108 396.7 1174 33.7
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.6e-107 395.2 1140 34.1
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 4.4e-105 387.1 1090 35.0
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.7e-104 385.2 1160 36.6
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.3e-103 380.2 1183 37.1
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 2.6e-102 377.9 1155 36.1
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 6.5e-101 373.2 1243 34.9
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 8.5e-101 372.9 1195 35.1
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 7.2e-100 369.8 1243 34.5
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 9.4e-100 369.4 1192 35.9
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 2.0e-94 351.7 1160 36.1
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 3.5e-94 350.9 1091 34.6
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.0e-93 349.4 1089 34.6
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 4.7e-91 340.5 959 36.1
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 8.8e-90 336.3 1088 34.7
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 8.8e-90 336.3 1088 34.7
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-89 335.9 1094 34.5
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 2.6e-89 334.7 1146 35.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.7e-85 322.0 1008 37.6
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.9e-84 318.5 1037 34.4
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.7e-78 296.6 427 45.7
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 3.2e-76 291.2 1045 34.8
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 5.5e-76 290.4 1195 31.8
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 9.8e-73 279.6 1263 31.4
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 5.4e-71 273.9 1241 33.0
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.8e-67 261.5 837 39.7
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.5e-65 255.8 1014 31.8
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.0e-65 255.4 1262 30.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.8e-62 243.4 321 51.4
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 9.5e-60 236.5 844 31.6
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.9e-55 222.2 1231 29.6
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 5.0e-53 214.2 1209 28.2
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 4.3e-52 211.1 281 51.2
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.5e-52 209.9 998 32.9
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.5e-49 200.3 214 54.7
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 3.7e-48 198.0 967 28.2
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 2.3e-45 188.7 412 36.4
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.9e-44 185.7 940 31.4
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 8.1e-43 180.3 534 34.6
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.4e-42 179.5 189 54.5
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.2e-38 166.4 439 33.7
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.0e-37 163.3 315 41.0
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.2e-35 156.4 559 32.6
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.6e-35 156.0 372 34.7
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 2.4e-34 152.1 445 32.1
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 2.0e-33 149.1 385 32.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.1e-30 139.0 122 64.8
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 3.5e-30 138.3 139 59.0
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 8.7e-29 133.7 105 58.1
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 4.3e-28 131.3 223 46.2
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.4e-24 117.5 158 42.4
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 1.0e-21 110.2 355 29.6
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.6e-19 102.8 162 38.9
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 8.1e-19 100.5 156 39.1
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 3.1e-18 98.6 152 40.8
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.3e-18 97.8 131 47.3
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.5e-17 96.3 246 35.0
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 2.0e-17 95.9 61 73.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 1.3e-16 93.2 129 49.6
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 4.6e-14 84.7 115 40.9
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 4.8e-11 74.7 123 41.5
Lsat_1_v5_gn_6_9320 Lactuca sativa HOM05D004845 ORTHO05D005957 3.1e-10 72.0 152 44.7
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 3.8e-08 65.1 210 30.0
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 4.9e-08 64.7 61 57.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 6.5e-08 64.3 169 33.1
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.7e-06 58.9 637 30.6


User provided reference genes

Program Settings