Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 2.9e-27 124.4 60 100.0
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.0e-19 99.4 48 97.9
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.9e-19 97.4 48 95.8
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.8e-17 91.3 48 89.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 6.2e-17 90.1 49 85.7
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 8.1e-17 89.7 48 87.5
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 8.1e-17 89.7 48 87.5
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.4e-16 89.0 49 85.7
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.4e-16 89.0 49 85.7
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.4e-16 89.0 49 85.7
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.4e-16 89.0 48 85.4
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 2.3e-16 88.2 48 85.4
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 2.3e-16 88.2 51 80.4
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 3.1e-16 87.8 48 85.4
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 4.0e-16 87.4 48 83.3
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.2e-15 85.9 48 83.3
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 1.2e-15 85.9 48 85.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.5e-15 85.5 48 81.2
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.5e-15 85.5 48 81.2
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 2.0e-15 85.1 48 83.3
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 2.0e-15 85.1 48 83.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 2.0e-15 85.1 48 81.2
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.6e-15 84.7 48 79.2
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.6e-15 84.7 48 81.2
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.6e-15 84.7 48 81.2
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 2.6e-15 84.7 48 79.2
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 3.4e-15 84.3 48 79.2
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 3.4e-15 84.3 48 79.2
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 4.4e-15 84.0 48 81.2
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 4.4e-15 84.0 48 81.2
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 4.4e-15 84.0 48 81.2
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.4e-15 84.0 48 81.2
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 5.8e-15 83.6 48 83.3
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 7.5e-15 83.2 48 77.1
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 7.5e-15 83.2 48 81.2
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 9.8e-15 82.8 48 79.2
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 9.8e-15 82.8 48 81.2
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.3e-14 82.4 52 76.9
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.3e-14 82.4 48 79.2
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.7e-14 82.0 48 81.2
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 2.2e-14 81.6 51 70.6
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.2e-14 81.6 48 79.2
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.9e-14 81.3 48 79.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.9e-14 81.3 51 72.5
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.9e-14 81.3 51 72.5
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 2.9e-14 81.3 48 77.1
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.9e-14 81.3 48 79.2
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 2.9e-14 81.3 51 72.5
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 2.9e-14 81.3 51 72.5
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 4.9e-14 80.5 51 70.6
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 4.9e-14 80.5 47 78.7
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 4.9e-14 80.5 48 79.2
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 4.9e-14 80.5 48 75.0
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 4.9e-14 80.5 48 77.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 6.4e-14 80.1 48 79.2
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 8.3e-14 79.7 48 77.1
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 8.3e-14 79.7 48 77.1
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 8.3e-14 79.7 48 77.1
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 8.3e-14 79.7 48 77.1
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 8.3e-14 79.7 48 75.0
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.4e-13 79.0 48 75.0
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.4e-13 79.0 49 75.5
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.9e-13 78.6 48 72.9
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 2.4e-13 78.2 48 79.2
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 2.4e-13 78.2 48 75.0
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 3.2e-13 77.8 46 80.4
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 3.2e-13 77.8 48 72.9
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.2e-13 77.8 48 72.9
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 3.2e-13 77.8 48 72.9
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 4.1e-13 77.4 48 72.9
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 5.4e-13 77.0 59 61.0
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 5.4e-13 77.0 48 72.9
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 5.4e-13 77.0 47 76.6
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 9.2e-13 76.3 48 72.9
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.2e-12 75.9 49 69.4
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.2e-12 75.9 48 70.8
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.6e-12 75.5 47 74.5
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 3.5e-12 74.3 48 70.8
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 4.6e-12 73.9 59 57.6
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 4.6e-12 73.9 59 57.6
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 4.6e-12 73.9 59 57.6
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.0e-11 72.8 46 78.3
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.0e-11 72.8 47 72.3
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.7e-11 72.0 48 70.8
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 3.0e-11 71.2 47 68.1
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 5.1e-11 70.5 53 62.3
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 5.1e-11 70.5 47 72.3
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 6.6e-11 70.1 48 66.7
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.6e-11 69.7 48 66.7
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.1e-10 69.3 48 68.8
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.1e-10 69.3 48 66.7
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.1e-10 69.3 48 66.7
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 5.6e-10 67.0 48 64.6
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.7e-09 63.9 48 62.5
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 5.8e-07 57.0 31 80.6
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.9e-06 54.7 43 65.1


User provided reference genes

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