Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 4.4e-253 877.5 441 100.0
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.9e-123 446.8 439 59.2
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 4.7e-114 415.6 468 55.6
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.1e-89 334.7 479 46.3
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 3.1e-89 333.2 479 46.1
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 8.1e-82 308.5 490 42.2
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.5e-80 304.3 468 44.2
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 9.9e-80 301.6 492 43.9
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.2e-79 300.4 495 40.6
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.2e-78 296.2 491 40.9
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.8e-73 280.8 502 40.8
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 3.1e-73 280.0 506 41.9
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 9.9e-72 275.0 485 40.4
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.2e-71 273.9 501 40.7
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 6.4e-71 272.3 508 39.2
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 5.4e-70 269.2 498 39.6
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 2.1e-69 267.3 496 38.9
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 2.7e-69 266.9 488 39.5
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 4.6e-69 266.2 473 41.4
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 9.6e-67 258.5 508 39.2
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 2.8e-66 256.9 502 37.5
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 3.7e-66 256.5 462 40.7
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 3.7e-66 256.5 509 38.1
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 4.8e-66 256.1 493 39.4
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 5.3e-65 252.7 508 37.6
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 6.9e-65 252.3 432 41.4
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 9.0e-65 251.9 498 37.3
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 2.0e-64 250.8 464 39.7
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.6e-64 250.4 491 36.5
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.6e-64 250.4 470 37.0
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.6e-64 250.4 474 36.3
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.7e-63 247.7 474 36.1
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 6.5e-63 245.7 509 37.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.1e-62 245.0 488 35.7
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.9e-62 244.2 510 38.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.6e-61 241.1 443 38.8
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 2.7e-61 240.4 435 39.5
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.0e-60 238.4 491 36.9
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.3e-60 238.0 451 39.2
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 5.1e-60 236.1 491 36.7
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 6.7e-60 235.7 431 39.4
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-59 235.0 501 35.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 1.1e-59 235.0 506 38.7
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 1.5e-59 234.6 431 39.7
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 5.7e-59 232.6 513 37.0
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 9.6e-59 231.9 527 35.9
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 9.6e-59 231.9 484 38.6
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 1.3e-58 231.5 523 36.7
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.3e-58 231.5 507 36.3
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.6e-58 231.1 524 35.3
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.6e-58 231.1 512 36.5
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 2.1e-58 230.7 501 35.7
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 6.2e-58 229.2 488 37.3
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.1e-57 228.4 509 36.9
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 6.9e-57 225.7 545 35.2
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 2.6e-56 223.8 533 37.9
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 2.6e-56 223.8 469 37.3
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 5.8e-56 222.6 517 36.0
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.3e-55 221.5 431 39.4
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 6.5e-55 219.2 495 36.4
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 8.4e-55 218.8 538 35.7
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 1.1e-54 218.4 500 37.0
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 9.3e-54 215.3 484 35.3
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.2e-53 214.9 465 38.1
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 2.1e-53 214.2 528 35.2
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 6.1e-53 212.6 468 35.9
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.0e-52 211.8 434 36.9
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 5.1e-52 209.5 506 35.4
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.1e-51 208.4 441 37.4
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.5e-51 207.2 527 35.3
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 9.7e-51 205.3 459 37.0
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 9.7e-51 205.3 459 37.0
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.2e-50 204.1 488 35.5
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.1e-49 201.8 499 35.1
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 2.4e-49 200.7 419 33.9
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.1e-49 200.3 414 37.9
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 3.1e-49 200.3 488 35.0
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 5.3e-49 199.5 438 35.8
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 6.9e-49 199.1 429 37.5
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 9.0e-49 198.7 501 36.3
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.2e-48 198.4 508 34.3
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 5.9e-48 196.1 429 36.8
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.0e-47 195.3 483 33.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.2e-47 194.1 421 36.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 8.5e-47 192.2 431 36.9
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 3.2e-46 190.3 430 35.8
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.1e-45 187.6 489 35.4
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.0e-44 185.3 426 36.2
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.0e-44 185.3 426 36.2
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.0e-44 185.3 426 36.2
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 3.0e-44 183.7 416 36.8
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 2.5e-43 180.6 429 34.7
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 5.7e-43 179.5 430 36.7
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 7.4e-43 179.1 435 33.6
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 9.7e-43 178.7 439 36.0
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 2.2e-42 177.6 434 35.7
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 3.1e-41 173.7 437 36.4
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 6.5e-39 166.0 424 33.5
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 2.1e-37 161.0 462 33.3
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 2.1e-37 161.0 442 33.9
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.4e-36 158.3 355 33.5
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.0e-36 157.1 472 32.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.3e-34 151.8 470 32.6
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.5e-32 144.8 483 28.6
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.7e-26 124.8 224 37.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 1.1e-25 122.1 389 32.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.1e-25 122.1 230 34.8
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.2e-24 118.6 321 34.0
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 3.2e-22 110.5 233 34.3
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.0e-19 101.3 393 29.0
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 4.4e-19 100.1 94 54.3
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 3.5e-16 90.5 206 36.9
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 6.5e-15 86.3 217 32.7
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.4e-12 78.6 131 38.9
SMO166G0077 Selaginella moellendorffii HOM05D024617 ORTHO05D023508 9.2e-09 65.9 322 25.8
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.2e-08 65.5 160 34.4


User provided reference genes

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