Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 0.0e+00 2137.8 1109 100.0
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 0.0e+00 1445.3 1080 70.5
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 0.0e+00 1385.5 1095 67.2
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1114.4 1119 54.7
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1107.4 1155 53.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.6e-299 1033.1 1240 48.2
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 2.5e-297 1025.8 1141 50.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.4e-292 1009.2 1150 49.7
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 8.1e-288 994.2 1153 48.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.4e-287 993.4 1144 49.4
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.4e-287 993.4 1149 48.7
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.8e-287 993.0 1136 49.2
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.6e-286 989.2 1145 48.6
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 9.9e-286 987.3 1136 49.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 1.6e-283 979.9 1223 47.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 5.1e-282 974.9 1145 48.7
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 6.6e-282 974.5 1139 48.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.9e-281 973.0 1148 48.3
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 4.0e-279 965.3 1143 48.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 9.9e-278 960.7 1144 47.9
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 1.3e-277 960.3 1162 46.8
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 3.2e-276 955.7 1152 47.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 5.4e-276 954.9 1154 47.3
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 5.4e-276 954.9 1136 48.3
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 8.7e-274 947.6 1137 47.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 1.5e-273 946.8 1137 47.4
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.3e-273 945.7 1128 47.1
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 7.3e-273 944.5 1143 47.3
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 4.7e-272 941.8 1144 47.4
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 5.3e-271 938.3 1144 47.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 6.9e-271 937.9 1143 47.1
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 3.8e-269 932.2 1144 46.9
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 1.4e-268 930.2 1148 47.2
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 3.2e-268 929.1 1140 46.1
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 5.4e-268 928.3 1143 47.1
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 2.7e-267 926.0 1139 46.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 2.3e-266 922.9 1136 47.2
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 2.5e-265 919.5 1135 47.0
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 3.3e-265 919.1 1154 46.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 3.3e-265 919.1 1146 45.0
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.8e-263 913.3 1144 45.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.9e-261 906.0 1159 46.3
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.1e-260 904.0 1145 45.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.1e-260 904.0 1144 45.5
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.6e-259 900.2 1150 43.9
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-258 897.1 1138 44.6
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 3.0e-258 896.0 1143 46.3
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.3e-257 892.1 1127 46.2
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.8e-256 889.4 1097 47.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 6.2e-256 888.3 1147 44.9
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 1.4e-255 887.1 1140 45.7
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.4e-255 887.1 1035 48.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 6.9e-255 884.8 1100 46.4
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 6.4e-253 878.2 1142 44.5
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.4e-252 877.1 1146 44.5
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 4.2e-252 875.5 1117 44.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 7.4e-249 864.8 1158 43.4
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.4e-247 860.5 1136 43.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.8e-247 860.1 1139 43.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 4.5e-246 855.5 1135 44.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 7.6e-246 854.7 1106 44.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 7.1e-244 848.2 1072 46.4
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.5e-238 830.5 1016 46.2
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.2e-235 820.8 1223 41.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 3.6e-235 819.3 1134 42.4
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.1e-235 818.5 1133 44.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 6.1e-235 818.5 1141 43.3
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 8.8e-234 814.7 1121 42.7
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 9.7e-233 811.2 1131 41.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.3e-232 810.8 1133 42.0
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 2.8e-232 809.7 1070 43.8
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.7e-232 809.3 1131 41.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.9e-231 805.1 1159 41.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.6e-230 803.1 1135 40.9
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 7.7e-230 801.6 1127 40.5
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.0e-229 801.2 1159 42.5
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.2e-229 800.0 1130 42.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 8.5e-229 798.1 1077 44.6
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 3.0e-226 789.6 1121 40.6
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 2.6e-225 786.6 1131 40.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 3.3e-225 786.2 1125 40.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 3.3e-225 786.2 1123 41.0
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 8.2e-224 781.6 1126 40.3
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.5e-222 775.8 1126 40.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 2.2e-216 756.9 1124 40.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.0e-210 738.0 1048 43.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.3e-208 731.1 1089 42.1
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.4e-207 726.9 1158 38.9
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 4.1e-207 726.1 1131 40.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 3.5e-206 723.0 1125 39.6
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.8e-202 708.8 1059 39.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.9e-197 693.3 897 44.6
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.6e-189 665.6 956 41.2
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.4e-175 620.5 896 42.9
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.8e-150 535.8 1043 35.0
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.3e-133 481.9 1159 32.3
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.1e-122 445.7 1165 29.4
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 7.4e-116 422.9 696 38.1
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 4.1e-114 417.2 646 39.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.4e-111 408.7 1089 29.5
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.0e-98 363.2 435 48.3
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-95 355.9 525 40.0
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.7e-89 333.2 435 44.4
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.9e-88 331.3 335 53.1
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 3.6e-78 297.7 505 36.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.0e-77 294.7 230 64.3
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.8e-77 293.5 439 41.5
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.7e-75 288.9 421 41.8
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.8e-68 263.8 225 58.2
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.7e-59 234.6 1267 23.2
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.4e-58 231.9 313 47.9
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 7.3e-55 220.3 155 66.5
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-51 209.5 205 54.1
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 5.8e-44 184.1 182 51.1
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.1e-42 177.2 163 55.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 5.6e-39 167.5 250 40.4
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 4.2e-34 151.4 184 45.7
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.3e-32 145.6 156 49.4
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.1e-31 143.3 116 60.3
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.5e-31 142.1 222 37.4
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-25 123.2 100 70.0
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-25 123.2 100 70.0
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.7e-25 122.1 351 29.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 3.5e-25 121.7 147 44.9
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 3.5e-25 121.7 147 44.9
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 8.7e-24 117.1 181 38.7
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.3e-23 115.2 192 42.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.3e-23 115.2 187 34.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.8e-21 109.4 136 44.9
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.4e-21 109.0 95 61.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 4.5e-20 104.8 128 43.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 2.2e-19 102.4 93 53.8
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 4.9e-19 101.3 108 49.1
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 9.3e-18 97.1 75 60.0
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-17 96.7 127 41.7
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.6e-17 94.7 120 43.3
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 7.9e-17 94.0 139 46.0
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.8e-13 82.8 73 46.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 6.9e-13 80.9 155 33.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 6.9e-13 80.9 76 59.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 6.9e-13 80.9 136 37.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 2.6e-12 79.0 69 47.8
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.4e-11 73.9 63 63.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.4e-11 73.9 59 66.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.1e-10 73.6 55 65.5
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 7.2e-10 70.9 242 25.6
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.6e-09 68.2 74 48.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.3e-08 65.9 62 51.6
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.1e-07 63.5 99 42.4
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.6e-06 59.7 48 56.2


User provided reference genes

Program Settings