Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 9.0e-81 303.5 153 100.0
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 3.4e-72 275.0 153 88.2
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.3e-71 273.1 152 88.2
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.7e-71 272.7 153 87.6
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 2.2e-71 272.3 153 86.3
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 2.2e-71 272.3 153 85.6
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.2e-71 272.3 151 86.8
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.8e-71 271.6 153 85.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 6.5e-71 270.8 153 86.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.4e-70 269.6 153 84.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.5e-70 268.9 150 86.0
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 3.2e-70 268.5 153 83.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.2e-70 268.5 150 86.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 7.2e-70 267.3 151 86.1
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.2e-70 267.3 151 85.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 9.4e-70 266.9 151 82.8
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 9.4e-70 266.9 153 82.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 9.4e-70 266.9 150 85.3
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.6e-69 266.2 151 84.8
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.6e-69 266.2 151 85.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 147 85.7
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 153 84.3
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 3.6e-69 265.0 153 81.0
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 6.1e-69 264.2 150 83.3
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 6.1e-69 264.2 153 80.4
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 83.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 80.4
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.4e-68 263.1 151 83.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 80.4
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 81.7
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 80.4
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.3e-68 262.3 153 83.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.9e-68 261.5 151 82.1
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 3.9e-68 261.5 153 79.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 5.1e-68 261.2 151 81.5
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 79.1
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.0e-67 259.2 150 81.3
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 80.4
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 79.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 80.4
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.3e-67 258.5 153 81.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 4.4e-67 258.1 147 82.3
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 78.4
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 4.4e-67 258.1 153 78.4
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 5.7e-67 257.7 145 84.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 5.7e-67 257.7 145 81.4
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 7.4e-67 257.3 153 78.4
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 7.4e-67 257.3 153 78.4
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 7.4e-67 257.3 153 83.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 82.4
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 79.5
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 79.7
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.7e-66 256.1 150 82.7
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.7e-66 256.1 152 82.2
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.2e-66 255.8 151 80.1
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 79.1
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 150 80.0
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 79.1
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 6.3e-66 254.2 151 82.8
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 6.3e-66 254.2 153 77.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 79.7
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 8.2e-66 253.8 151 81.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 8.2e-66 253.8 151 80.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 76.5
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-65 253.1 151 78.1
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 78.4
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.4e-65 253.1 151 80.1
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 77.1
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 77.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 77.1
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.1e-65 251.9 153 79.1
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.1e-65 251.9 152 78.3
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 3.1e-65 251.9 152 79.6
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 3.1e-65 251.9 151 77.5
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 78.4
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 4.1e-65 251.5 151 78.1
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 78.4
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 7.0e-65 250.8 151 80.8
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 9.1e-65 250.4 150 81.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.2e-64 250.0 155 77.4
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.2e-64 250.0 153 78.4
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.6e-64 249.6 150 80.0
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 77.8
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 2.6e-64 248.8 155 76.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.5e-64 248.4 154 76.6
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 77.1
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 4.5e-64 248.1 153 77.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.9e-64 247.7 153 77.1
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.0e-63 246.9 149 81.2
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 79.5
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 73.9
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.2e-63 245.7 153 77.8
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.9e-63 245.4 153 75.8
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-63 245.0 153 77.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.1
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 6.5e-63 244.2 153 77.1
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.1e-62 243.4 151 79.5
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 74.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.5e-62 242.3 151 74.8
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 3.2e-62 241.9 150 74.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 71.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.2e-61 240.0 151 73.5
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.6e-61 239.6 150 74.0
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.6e-61 239.6 152 72.4
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 2.7e-61 238.8 150 74.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 3.6e-61 238.4 150 74.0
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 4.7e-61 238.0 150 73.3
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 4.7e-61 238.0 151 75.5
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 6.1e-61 237.7 153 71.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 6.1e-61 237.7 150 74.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.0e-60 236.9 150 74.0
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.3e-60 235.7 153 71.9
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 5.2e-60 234.6 147 78.9
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 5.2e-60 234.6 153 69.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 6.7e-60 234.2 151 70.2
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 8.8e-60 233.8 153 70.6
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.0e-59 232.6 153 71.2
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 7.5e-59 230.7 151 70.9
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.8e-57 226.1 168 64.9
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.1e-57 225.3 150 74.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.0e-55 220.3 155 67.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.9e-55 218.8 122 87.7
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.9e-55 218.8 155 66.5
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 8.5e-55 217.2 119 89.1
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 6.1e-53 211.1 142 70.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.4e-52 209.9 153 65.4
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 4.0e-52 208.4 153 62.1
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 3.4e-51 205.3 145 63.4
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.3e-50 200.7 153 64.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.0e-48 196.1 124 75.8
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 4.5e-48 194.9 128 72.7
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 9.4e-46 187.2 111 77.5
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.6e-45 186.4 111 76.6
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.0e-44 182.2 153 53.6
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 5.2e-44 181.4 181 55.8
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 3.3e-38 162.2 149 51.7
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 6.8e-36 154.5 95 81.1
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-31 139.0 75 85.3
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.3e-30 135.6 100 67.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.5e-30 134.0 78 80.8
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.2e-29 133.7 75 81.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 2.8e-29 132.5 121 57.9
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.0e-28 130.6 144 45.1
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.9e-26 122.5 75 74.7
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.4e-25 120.2 75 81.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.9e-25 119.8 67 80.6
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-25 119.4 65 83.1
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.4e-25 119.4 75 74.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 9.2e-25 117.5 75 73.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.2e-24 117.1 89 67.4
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 7.3e-22 107.8 149 38.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.1e-12 77.4 48 81.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.6e-08 63.5 55 61.8


User provided reference genes

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