Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.4e-60 236.1 120 100.0
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 2.6e-35 152.1 119 71.4
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 3.5e-35 151.8 113 76.1
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.7e-34 149.4 125 67.2
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 3.1e-28 128.6 106 62.3
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 1.7e-26 122.9 107 59.8
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.8e-26 121.7 85 74.1
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 5.0e-26 121.3 70 81.4
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 5.0e-26 121.3 104 63.5
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 2.5e-25 119.0 95 63.2
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 2.5e-25 119.0 87 71.3
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 3.2e-25 118.6 93 65.6
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 3.2e-25 118.6 117 54.7
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 4.2e-25 118.2 96 60.4
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 4.2e-25 118.2 98 64.3
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 4.2e-25 118.2 96 61.5
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 9.4e-25 117.1 91 63.7
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 9.4e-25 117.1 111 59.5
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.2e-24 116.7 119 53.8
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 1.2e-24 116.7 93 63.4
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 1.6e-24 116.3 85 69.4
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 1.6e-24 116.3 85 69.4
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 1.6e-24 116.3 92 67.4
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 1.6e-24 116.3 116 53.4
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 1.6e-24 116.3 98 65.3
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 3.6e-24 115.2 70 80.0
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 3.6e-24 115.2 85 68.2
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 3.6e-24 115.2 78 70.5
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 4.7e-24 114.8 108 60.2
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 4.7e-24 114.8 80 71.2
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 8.0e-24 114.0 108 60.2
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 1.0e-23 113.6 105 56.2
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 1.0e-23 113.6 95 66.3
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 1.0e-23 113.6 92 66.3
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 1.8e-23 112.8 78 67.9
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 1.8e-23 112.8 98 63.3
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 2.3e-23 112.5 81 63.0
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 4.0e-23 111.7 108 58.3
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 4.0e-23 111.7 108 55.6
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 5.2e-23 111.3 86 61.6
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 6.7e-23 110.9 90 65.6
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 6.7e-23 110.9 94 60.6
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.2e-22 110.2 77 67.5
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.5e-22 109.8 103 59.2
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 1.5e-22 109.8 101 60.4
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 1.5e-22 109.8 114 52.6
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 1.5e-22 109.8 95 62.1
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 2.0e-22 109.4 97 54.6
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 2.0e-22 109.4 109 56.0
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 3.3e-22 108.6 74 68.9
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 7.5e-22 107.5 62 77.4
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 1.3e-21 106.7 120 55.0
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 1.7e-21 106.3 96 62.5
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 6.3e-21 104.4 118 50.8
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 1.1e-20 103.6 118 51.7
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 1.1e-20 103.6 70 70.0
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 1.1e-20 103.6 82 62.2
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 1.8e-20 102.8 78 64.1
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 2.4e-20 102.4 107 52.3
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 2.4e-20 102.4 119 53.8
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 2.4e-20 102.4 90 55.6
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 4.1e-20 101.7 119 50.4
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 4.1e-20 101.7 56 85.7
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 4.1e-20 101.7 67 68.7
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 4.1e-20 101.7 96 55.2
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 5.3e-20 101.3 113 51.3
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 5.3e-20 101.3 56 91.1
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 5.3e-20 101.3 86 55.8
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 7.0e-20 100.9 114 55.3
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 7.0e-20 100.9 94 58.5
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 7.0e-20 100.9 94 58.5
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 7.0e-20 100.9 94 58.5
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 7.0e-20 100.9 96 57.3
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 7.0e-20 100.9 76 61.8
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 1.2e-19 100.1 106 53.8
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 1.2e-19 100.1 106 53.8
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 1.6e-19 99.8 87 58.6
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 2.0e-19 99.4 106 54.7
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 2.0e-19 99.4 67 68.7
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 2.0e-19 99.4 62 71.0
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 2.7e-19 99.0 93 55.9
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.5e-19 98.6 87 58.6
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 4.5e-19 98.2 100 54.0
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 4.5e-19 98.2 101 53.5
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 5.9e-19 97.8 117 52.1
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 5.9e-19 97.8 92 56.5
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 7.7e-19 97.4 73 63.0
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 1.0e-18 97.1 72 72.2
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 1.3e-18 96.7 72 65.3
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.7e-18 96.3 63 68.3
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 2.2e-18 95.9 118 47.5
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 8.5e-18 94.0 93 55.9
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.1e-17 93.6 124 47.6
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 1.1e-17 93.6 63 65.1
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 1.5e-17 93.2 57 75.4
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 1.6e-16 89.7 55 72.7
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 3.6e-16 88.6 52 75.0
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 6.1e-16 87.8 60 66.7
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 8.0e-16 87.4 47 83.0
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 5.2e-15 84.7 105 49.5
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.2e-14 83.6 52 71.2
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 4.8e-13 78.2 78 57.7
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 8.3e-13 77.4 41 82.9
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 2.4e-12 75.9 55 58.2
Lsat_1_v5_gn_9_86741 Lactuca sativa HOM05D005915 ORTHO05D007239 5.4e-12 74.7 66 66.7
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 7.7e-11 70.9 74 54.1
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 5.0e-10 68.2 79 43.0
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 6.6e-10 67.8 109 41.3
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 3.3e-09 65.5 70 54.3
TAR625G0588 Trochodendron aralioides HOM05D005915 ORTHO05D007239 3.3e-09 65.5 56 58.9
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 4.2e-09 65.1 37 75.7
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.2e-08 63.5 38 78.9
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 2.8e-08 62.4 65 53.8
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 3.6e-08 62.0 34 79.4
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 6.1e-08 61.2 35 74.3
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 8.0e-08 60.8 43 72.1
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 1.4e-07 60.1 104 40.4
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 1.2e-06 57.0 37 73.0
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 3.4e-06 55.5 50 54.0


User provided reference genes

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