Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 1.6e-58 229.2 115 100.0
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 3.0e-52 208.4 115 92.2
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 8.4e-39 163.7 116 72.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.9e-31 138.7 114 59.6
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.9e-31 138.7 116 61.2
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 4.9e-31 137.9 115 60.9
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.2e-29 133.3 115 58.3
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 2.7e-29 132.1 115 58.3
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 1.3e-28 129.8 94 69.1
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 8.7e-28 127.1 107 59.8
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 1.9e-27 125.9 115 58.3
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 3.3e-27 125.2 115 54.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.3e-26 123.2 109 58.7
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.8e-26 122.1 102 59.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 4.8e-26 121.3 106 56.6
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 6.3e-26 120.9 95 61.1
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 6.3e-26 120.9 102 58.8
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.8e-25 119.4 94 58.5
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 3.1e-25 118.6 94 62.8
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 3.1e-25 118.6 115 52.2
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 9.0e-25 117.1 92 60.9
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.2e-24 116.7 92 62.0
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.5e-24 116.3 96 61.5
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.6e-24 115.5 92 62.0
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.6e-24 115.5 92 60.9
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.4e-24 115.2 92 65.2
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.4e-24 115.2 92 65.2
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.4e-24 115.2 92 60.9
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 4.5e-24 114.8 100 56.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 5.9e-24 114.4 90 62.2
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 7.6e-24 114.0 99 59.6
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.3e-23 113.2 97 58.8
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.3e-23 113.2 100 56.0
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 1.7e-23 112.8 90 63.3
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 3.8e-23 111.7 103 56.3
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 6.5e-23 110.9 97 59.8
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 6.5e-23 110.9 90 62.2
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 6.5e-23 110.9 89 58.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 8.4e-23 110.5 101 55.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 1.1e-22 110.2 98 58.2
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.1e-22 110.2 97 57.7
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 1.4e-22 109.8 102 53.9
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.9e-22 109.4 110 51.8
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.5e-22 109.0 101 53.5
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 3.2e-22 108.6 95 57.9
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 3.2e-22 108.6 97 56.7
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 5.5e-22 107.8 93 58.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 5.5e-22 107.8 93 58.1
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 7.2e-22 107.5 95 57.9
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.2e-21 106.7 95 57.9
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.2e-21 106.7 95 57.9
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.2e-21 106.7 86 61.6
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 1.6e-21 106.3 95 56.8
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.6e-21 106.3 99 56.6
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.6e-21 106.3 97 55.7
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 2.1e-21 105.9 106 50.9
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 3.5e-21 105.1 93 58.1
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 4.6e-21 104.8 89 59.6
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 4.6e-21 104.8 95 56.8
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 4.6e-21 104.8 88 60.2
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 7.9e-21 104.0 116 48.3
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 7.9e-21 104.0 84 60.7
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.0e-20 103.6 105 52.4
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.0e-20 103.6 95 55.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.3e-20 103.2 91 56.0
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 1.3e-20 103.2 100 54.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.8e-20 102.8 102 49.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 3.9e-20 101.7 88 56.8
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 5.1e-20 101.3 93 53.8
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 8.7e-20 100.5 89 56.2
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 4.3e-19 98.2 89 56.2
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 7.4e-19 97.4 91 56.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 7.4e-19 97.4 100 48.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 1.3e-18 96.7 93 54.8
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.6e-18 96.3 93 53.8
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 4.8e-18 94.7 92 50.0
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.1e-17 93.6 95 54.7
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 6.9e-17 90.9 90 50.0
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.4e-16 88.6 97 50.5
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 4.5e-16 88.2 88 51.1
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 5.9e-16 87.8 89 50.6
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 7.7e-16 87.4 87 55.2
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 2.9e-15 85.5 86 52.3
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.8e-15 85.1 97 46.4
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 7.2e-14 80.9 112 42.0
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 1.6e-13 79.7 64 65.6
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 2.1e-13 79.3 90 53.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 6.3e-10 67.8 60 56.7
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.1e-06 57.0 74 45.9


User provided reference genes

Program Settings