Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.4e-37 158.3 79 100.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.6e-33 145.6 79 91.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.7e-33 144.1 79 89.9
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.5e-31 139.0 79 82.3
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.0e-31 138.7 79 83.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.2e-30 135.2 79 79.7
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.9e-30 134.8 79 78.5
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 3.8e-30 134.4 78 82.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 4.9e-30 134.0 79 78.5
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 78.5
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.4e-30 133.3 79 77.2
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.4e-30 133.3 79 78.5
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 8.4e-30 133.3 79 78.5
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 79.7
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 77.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 78.5
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 77.2
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 75.9
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 78.5
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 75.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 79.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.4e-29 130.6 79 75.9
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 5.4e-29 130.6 79 75.9
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 75.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 75.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 75.9
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 74.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 77.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 74.7
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 74.7
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 73.4
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 74.7
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 2.7e-28 128.3 77 76.6
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.7e-28 128.3 77 74.0
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 74.7
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.7e-28 128.3 75 77.3
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 72.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 3.5e-28 127.9 80 76.2
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.5e-28 127.9 77 76.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.6e-28 127.5 77 77.9
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 6.0e-28 127.1 76 75.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 74.7
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.0e-27 126.3 79 73.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.0e-27 126.3 80 75.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 75.9
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 72.2
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 70.9
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.3e-27 125.2 76 76.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.3e-27 125.2 101 64.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 75.9
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 72.2
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 72.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 70.9
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.9e-27 124.4 74 79.7
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.9e-27 124.4 74 79.7
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 72.2
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 5.1e-27 124.0 79 70.9
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 6.6e-27 123.6 76 73.7
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 6.6e-27 123.6 75 73.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 8.7e-27 123.2 76 73.7
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 8.7e-27 123.2 80 72.5
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 1.1e-26 122.9 79 72.2
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.1e-26 122.9 79 72.2
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 73.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 75.0
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.9e-26 122.1 77 71.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 69.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.3e-26 121.3 78 73.1
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 4.3e-26 120.9 76 72.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 4.3e-26 120.9 79 72.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.3e-26 120.9 75 72.0
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 72.2
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 70.9
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 69.6
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 70.9
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.2e-25 119.4 76 72.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-25 119.4 86 66.3
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 68.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 69.6
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 68.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 67.1
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 71.1
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.2e-25 117.1 75 69.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.2e-25 117.1 75 69.3
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 69.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 70.7
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 70.7
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 70.7
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 4.0e-24 114.4 75 70.7
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 4.0e-24 114.4 76 69.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.2e-24 114.0 76 69.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 5.2e-24 114.0 79 64.6
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 6.9e-24 113.6 63 82.5
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.5e-23 112.5 77 64.9
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 61 83.6
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 64.1
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 64.1
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 78 69.2
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.8e-23 110.5 61 82.0
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 77 61.0
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 7.6e-23 110.2 70 67.1
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 9.9e-23 109.8 67 73.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 9.9e-23 109.8 115 51.3
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 9.9e-23 109.8 79 63.3
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 62.0
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.2e-22 108.6 79 62.0
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 65 75.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 2.9e-22 108.2 78 62.8
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.9e-22 108.2 64 78.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 60.8
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 60.8
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 60.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 6.4e-22 107.1 79 60.8
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 60.8
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 8.4e-22 106.7 74 63.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.4e-21 105.1 73 69.9
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.4e-21 105.1 79 62.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 3.2e-21 104.8 79 59.5
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.2e-21 104.8 69 65.2
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.4e-21 104.0 76 60.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.1e-21 103.6 59 78.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.2e-20 102.8 79 57.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.6e-20 102.4 76 59.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.5e-20 101.3 57 82.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.6e-20 100.9 76 56.6
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.6e-20 100.9 73 61.6
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 4.6e-20 100.9 69 65.2
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 6.0e-20 100.5 74 60.8
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 7.8e-20 100.1 57 77.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 2.5e-18 95.1 54 75.9
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.5e-18 95.1 55 76.4
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.8e-17 91.7 64 62.5
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.6e-17 91.3 67 59.7
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 4.8e-17 90.9 65 63.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 4.8e-17 90.9 53 69.8
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 8.1e-17 90.1 65 61.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.0e-16 87.8 67 52.2
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 9.0e-16 86.7 59 57.6
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.8e-11 72.4 59 52.5
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.5e-10 68.6 67 47.8
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 7.4e-10 67.0 47 63.8
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.6e-09 65.9 73 42.5
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 6.2e-09 63.9 79 38.0
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-08 63.2 70 42.9


User provided reference genes

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