Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 3.0e-69 265.4 166 100.0
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 5.4e-47 191.4 175 78.9
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 6.2e-43 177.9 178 76.4
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 4.6e-30 135.2 173 64.7
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 6.7e-29 131.3 165 57.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.8e-27 125.9 167 55.1
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 4.8e-27 125.2 171 63.2
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 5.3e-26 121.7 173 60.1
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 6.9e-26 121.3 173 61.3
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 6.9e-26 121.3 174 56.9
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 9.0e-26 120.9 167 58.1
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 9.0e-26 120.9 171 60.8
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.2e-25 120.6 176 60.2
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.2e-25 120.6 170 56.5
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.2e-25 120.6 170 47.1
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 2.0e-25 119.8 171 62.0
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 4.5e-25 118.6 176 58.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 4.5e-25 118.6 171 45.0
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.0e-24 117.5 172 59.3
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 1.0e-24 117.5 168 54.2
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-24 117.1 168 62.5
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.7e-24 116.7 176 58.5
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.7e-24 116.7 171 59.6
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.2e-24 116.3 168 62.5
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.2e-24 116.3 168 62.5
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 2.9e-24 115.9 161 53.4
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 2.9e-24 115.9 169 62.1
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 6.5e-24 114.8 167 59.3
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 8.4e-24 114.4 172 61.0
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.4e-24 114.4 174 54.6
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 8.4e-24 114.4 175 57.1
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.1e-23 114.0 184 49.5
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 1.4e-23 113.6 170 57.1
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 1.4e-23 113.6 180 58.9
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 2.5e-23 112.8 173 57.8
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 5.5e-23 111.7 164 45.7
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 5.5e-23 111.7 180 58.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.2e-22 110.5 175 58.9
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.6e-22 110.2 171 55.0
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 2.1e-22 109.8 172 58.7
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 2.1e-22 109.8 176 58.0
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 2.7e-22 109.4 170 60.0
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 2.7e-22 109.4 167 60.5
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 4.6e-22 108.6 114 57.9
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 6.1e-22 108.2 169 49.1
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.1e-22 108.2 165 42.4
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.0e-21 107.5 166 50.6
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-21 107.1 165 47.9
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.3e-21 107.1 165 41.8
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.8e-21 106.7 168 51.2
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 5.1e-21 105.1 172 58.1
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.7e-21 104.8 172 58.1
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.7e-21 104.8 165 40.6
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 8.7e-21 104.4 122 49.2
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.7e-21 104.4 175 57.1
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 8.7e-21 104.4 175 54.9
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.1e-20 104.0 165 53.3
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-20 103.6 166 42.8
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.5e-20 103.6 171 59.1
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.9e-20 103.2 166 42.8
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.9e-20 103.2 166 59.0
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 3.3e-20 102.4 171 53.8
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 3.3e-20 102.4 171 53.8
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 7.4e-20 101.3 170 49.4
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 9.7e-20 100.9 165 41.2
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 2.8e-19 99.4 165 58.8
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.8e-19 99.4 182 48.4
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.8e-19 98.6 185 42.7
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.2e-19 97.8 123 51.2
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 8.2e-19 97.8 164 56.7
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 1.1e-18 97.4 163 36.8
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.1e-18 97.4 163 58.9
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.4e-18 97.1 167 50.9
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 2.4e-18 96.3 172 52.3
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.1e-18 95.5 175 52.6
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 5.3e-18 95.1 182 51.6
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 6.9e-18 94.7 150 55.3
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.2e-17 94.0 171 56.1
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.2e-17 94.0 125 61.6
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 1.2e-17 94.0 171 50.9
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 1.2e-17 94.0 159 57.9
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.5e-17 93.6 163 36.2
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.0e-17 93.2 114 51.8
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.0e-17 93.2 164 55.5
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.0e-17 93.2 165 56.4
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 3.4e-17 92.4 169 36.1
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 3.4e-17 92.4 169 58.0
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 4.5e-17 92.0 158 37.3
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 5.9e-17 91.7 162 36.4
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 5.9e-17 91.7 162 36.4
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 7.7e-17 91.3 163 37.4
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 7.7e-17 91.3 163 37.4
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 7.7e-17 91.3 165 57.0
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 1.0e-16 90.9 162 58.6
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.3e-16 90.5 162 35.8
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-16 90.5 162 35.8
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.3e-16 90.5 162 35.8
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 2.2e-16 89.7 163 36.2
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 3.8e-16 89.0 167 52.1
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 3.8e-16 89.0 190 45.3
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.0e-16 88.6 170 55.3
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 6.5e-16 88.2 178 51.1
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 6.5e-16 88.2 159 54.7
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 8.5e-16 87.8 166 34.9
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 8.5e-16 87.8 165 41.8
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 8.5e-16 87.8 158 47.5
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.1e-15 87.4 162 37.0
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 1.4e-15 87.0 163 35.6
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.4e-15 87.0 159 54.7
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.9e-15 86.7 190 45.8
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.9e-15 86.7 128 41.4
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.9e-15 86.7 167 53.9
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 3.2e-15 85.9 166 39.2
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 4.2e-15 85.5 183 47.5
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.2e-15 85.5 164 53.0
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 2.7e-14 82.8 117 40.2
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 3.6e-14 82.4 166 55.4
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 4.6e-14 82.0 85 82.4
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 6.1e-14 81.6 163 52.8
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 7.9e-14 81.3 164 51.8
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.8e-13 80.1 109 48.6
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.0e-13 79.3 178 35.4
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 3.0e-13 79.3 163 51.5
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 3.9e-13 79.0 185 34.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.5e-12 77.0 85 43.5
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.3e-12 75.5 121 40.5
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 9.7e-12 74.3 145 36.6
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.8e-11 72.8 121 38.8
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 3.7e-11 72.4 168 49.4
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 6.3e-11 71.6 166 50.0
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.1e-10 70.9 114 44.7
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 5.9e-09 65.1 119 37.8
SEGI_18714 Sequoiadendron giganteum HOM05D005335 ORTHO05D006472 1.0e-08 64.3 95 66.3
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 5.0e-08 62.0 165 31.5
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 6.5e-08 61.6 250 34.8
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 6.5e-08 61.6 164 46.3
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.1e-07 60.8 109 39.4
Lj9P479T20 Lonicera japonica HOM05D005335 ORTHO05D006472 3.2e-07 59.3 69 85.5
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 4.2e-07 58.9 126 51.6
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 6.1e-06 55.1 143 39.9


User provided reference genes

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