Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.5e-169 599.4 292 100.0
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.8e-154 549.3 292 92.1
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 7.6e-153 543.9 297 89.6
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 3.3e-140 501.9 290 82.4
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 4.3e-140 501.5 275 85.1
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 2.8e-139 498.8 288 83.3
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 4.8e-139 498.0 288 82.6
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.4e-138 495.7 277 83.8
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 4.5e-137 491.5 276 84.4
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.3e-136 490.0 288 80.6
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 1.7e-136 489.6 288 80.9
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 8.4e-136 487.3 277 83.0
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 4.2e-135 485.0 288 81.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 5.5e-135 484.6 283 80.9
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 1.2e-134 483.4 278 81.7
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 1.6e-134 483.0 286 79.0
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 2.7e-134 482.3 278 82.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 2.7e-134 482.3 281 81.1
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 3.5e-134 481.9 275 81.5
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 4.6e-134 481.5 292 79.8
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 4.6e-134 481.5 279 81.7
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.0e-133 480.3 282 81.6
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 1.8e-133 479.6 277 79.4
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.0e-133 478.8 289 79.6
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.9e-133 478.4 274 83.6
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 3.9e-133 478.4 277 81.6
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 5.1e-133 478.0 289 78.2
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 5.1e-133 478.0 289 81.0
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 8.7e-133 477.2 274 83.2
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 8.7e-133 477.2 274 83.2
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 8.7e-133 477.2 288 78.8
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.9e-132 476.1 279 81.7
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.5e-132 475.7 279 81.7
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 3.3e-132 475.3 289 79.2
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 3.3e-132 475.3 288 78.5
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 5.7e-132 474.6 289 79.2
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 9.6e-132 473.8 277 80.9
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 9.6e-132 473.8 288 78.5
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.3e-131 473.4 281 78.6
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 3.7e-131 471.9 285 78.9
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-130 469.9 286 78.3
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 2.4e-130 469.2 272 82.0
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 3.1e-130 468.8 278 78.1
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.1e-130 468.8 314 73.6
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 3.1e-130 468.8 288 81.2
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 3.1e-130 468.8 288 78.5
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.9e-130 467.6 257 86.8
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 1.2e-129 466.8 274 81.8
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.2e-129 466.8 277 80.1
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 4.5e-129 464.9 277 79.1
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 4.5e-129 464.9 275 77.5
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.9e-129 464.5 273 78.8
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 1.0e-128 463.8 285 75.1
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.0e-128 463.8 272 80.9
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 1.0e-128 463.8 278 77.0
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.7e-128 463.0 276 79.0
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.7e-128 463.0 271 80.1
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 1.7e-128 463.0 278 76.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 2.2e-128 462.6 277 79.1
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 2.2e-128 462.6 277 77.3
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 2.2e-128 462.6 271 78.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.8e-128 461.8 277 79.4
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 1.4e-127 459.9 271 80.1
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.4e-127 459.9 275 80.7
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 3.2e-127 458.8 276 80.1
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 4.2e-127 458.4 276 76.8
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 4.2e-127 458.4 281 76.2
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 5.5e-127 458.0 279 79.2
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 5.5e-127 458.0 277 76.5
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 7.2e-127 457.6 271 80.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 7.2e-127 457.6 285 75.8
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 7.2e-127 457.6 271 80.1
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 9.3e-127 457.2 288 75.0
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 9.3e-127 457.2 303 73.3
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.2e-126 456.8 304 73.7
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.7e-126 455.7 285 77.5
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.6e-126 455.3 271 79.3
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 4.6e-126 454.9 284 77.5
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 7.9e-126 454.1 278 77.0
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.0e-125 453.8 290 75.9
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.0e-125 452.2 318 71.4
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 8.7e-125 450.7 280 77.5
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.1e-124 450.3 275 78.9
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.1e-124 450.3 284 74.6
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.3e-123 446.8 270 81.9
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 3.7e-123 445.3 284 73.6
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-121 440.3 276 75.7
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.2e-121 440.3 280 73.9
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 7.7e-121 437.6 283 75.6
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 1.0e-120 437.2 279 74.6
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 1.0e-120 437.2 279 74.6
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 4.2e-119 431.8 277 74.0
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 7.2e-119 431.0 290 73.8
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 2.1e-118 429.5 271 74.5
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.1e-118 429.5 321 66.7
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 6.1e-118 427.9 271 74.2
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 7.9e-118 427.6 270 73.3
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 2.0e-116 422.9 304 69.4
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.7e-115 419.9 273 73.3
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 3.1e-114 415.6 272 73.2
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 6.9e-114 414.5 365 60.5
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.7e-113 411.0 305 66.9
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 3.8e-112 408.7 268 71.6
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 3.6e-110 402.1 280 69.6
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 6.1e-110 401.4 275 69.8
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 7.9e-110 401.0 240 79.6
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.5e-103 379.4 241 74.3
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.2e-103 379.0 226 80.5
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 3.6e-102 375.6 223 78.9
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 9.7e-100 367.5 273 66.3
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 3.5e-97 359.0 289 65.1
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.9e-96 355.9 273 60.1
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.9e-95 353.2 194 87.1
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 5.5e-95 351.7 198 82.8
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 2.1e-94 349.7 210 78.6
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 4.4e-92 342.0 281 58.4
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 2.8e-91 339.3 272 60.3
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 4.9e-83 312.0 189 78.3
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 4.9e-83 312.0 189 78.3
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.1e-82 309.3 216 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.8e-78 296.2 226 62.8
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 4.6e-73 278.9 225 64.9
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 7.8e-73 278.1 283 50.5
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.3e-67 260.8 308 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 5.4e-66 255.4 195 63.6
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 2.1e-62 243.4 154 76.0
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 6.2e-62 241.9 156 76.9
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 8.6e-56 221.5 210 48.6
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.3e-55 219.5 262 46.2
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 3.4e-52 209.5 131 74.8
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 7.6e-44 181.8 237 45.6
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.5e-39 166.8 109 70.6
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 5.8e-36 155.6 211 39.8
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.7e-35 154.1 272 37.1
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 6.9e-29 132.1 89 66.3
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.5e-28 131.0 116 57.8
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 6.3e-14 82.4 39 89.7
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 4.1e-13 79.7 67 56.7
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 2.2e-11 73.9 45 71.1


User provided reference genes

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