Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 1.2e-52 209.5 104 100.0
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 4.6e-20 101.3 64 79.7
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 1.2e-12 76.6 64 67.2
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 2.7e-12 75.5 65 66.2
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.4e-11 73.2 51 74.5
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 5.1e-11 71.2 66 56.1
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 8.8e-11 70.5 64 51.6
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 8.8e-11 70.5 54 63.0
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 1.1e-10 70.1 64 51.6
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 5.7e-10 67.8 49 69.4
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 9.7e-10 67.0 51 62.7
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 1.7e-09 66.2 52 61.5
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.2e-09 65.9 51 62.7
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.2e-09 65.9 51 62.7
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 2.2e-09 65.9 51 64.7
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 3.7e-09 65.1 51 58.8
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 3.7e-09 65.1 49 67.3
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 4.8e-09 64.7 51 60.8
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 6.3e-09 64.3 51 58.8
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 8.2e-09 63.9 51 60.8
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 8.2e-09 63.9 51 60.8
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 8.2e-09 63.9 51 62.7
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.4e-08 63.2 51 58.8
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.4e-08 63.2 52 61.5
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 1.4e-08 63.2 51 56.9
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 1.4e-08 63.2 49 63.3
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.4e-08 63.2 52 61.5
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 1.4e-08 63.2 52 59.6
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 1.4e-08 63.2 51 58.8
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.8e-08 62.8 52 59.6
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.8e-08 62.8 52 59.6
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 2.4e-08 62.4 51 56.9
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 2.4e-08 62.4 51 54.9
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 3.1e-08 62.0 52 59.6
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 3.1e-08 62.0 51 60.8
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.1e-08 62.0 49 65.3
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 4.1e-08 61.6 51 60.8
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 5.3e-08 61.2 51 62.7
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 9.1e-08 60.5 52 57.7
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 9.1e-08 60.5 49 61.2
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 9.1e-08 60.5 49 55.1
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 1.5e-07 59.7 51 58.8
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.5e-07 59.7 52 59.6
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 1.5e-07 59.7 48 60.4
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.0e-07 59.3 49 61.2
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 2.6e-07 58.9 51 54.9
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 2.6e-07 58.9 51 52.9
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.6e-07 58.9 51 58.8
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 3.4e-07 58.5 51 58.8
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 3.4e-07 58.5 52 57.7
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 4.5e-07 58.2 51 58.8
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 4.5e-07 58.2 51 54.9
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 4.5e-07 58.2 51 58.8
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 5.9e-07 57.8 54 50.0
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 5.9e-07 57.8 48 60.4
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 7.7e-07 57.4 51 56.9
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 7.7e-07 57.4 51 56.9
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 1.0e-06 57.0 65 44.6
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 1.0e-06 57.0 78 43.6
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.0e-06 57.0 52 55.8
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 1.3e-06 56.6 51 54.9
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-06 56.6 51 54.9
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-06 56.6 51 54.9
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-06 56.6 51 54.9
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.7e-06 56.2 51 54.9
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 1.7e-06 56.2 51 51.0
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 2.2e-06 55.8 51 52.9
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 2.2e-06 55.8 51 54.9
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 3.8e-06 55.1 51 54.9
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 5.0e-06 54.7 46 56.5
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 8.5e-06 53.9 47 57.4
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 8.5e-06 53.9 50 54.0


User provided reference genes

Program Settings