Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.4e-142 509.6 255 100.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 4.9e-132 474.6 255 92.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 6.2e-127 457.6 255 89.0
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.5e-115 417.9 255 81.6
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.0e-113 413.7 255 80.0
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.0e-113 413.7 255 80.0
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 8.8e-113 410.6 255 80.8
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.1e-112 410.2 255 79.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.0e-112 409.5 257 79.4
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.0e-112 409.5 255 79.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 9.7e-112 407.1 255 80.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.3e-111 406.8 255 80.8
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.8e-111 404.8 255 78.4
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 6.3e-111 404.4 255 78.8
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 6.3e-111 404.4 249 80.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 6.9e-110 401.0 255 77.3
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.0e-109 399.4 255 78.4
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 3.4e-109 398.7 254 77.6
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 3.4e-109 398.7 255 77.3
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.9e-109 397.9 255 76.1
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 7.7e-109 397.5 238 81.1
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.3e-108 396.7 245 80.4
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.7e-108 396.4 255 76.5
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.2e-108 396.0 252 77.4
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.8e-108 395.2 238 80.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 3.8e-108 395.2 255 76.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 5.0e-108 394.8 255 76.9
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 6.5e-108 394.4 255 74.9
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 8.5e-108 394.0 247 78.5
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.1e-107 393.7 254 76.4
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-107 392.1 255 76.5
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.2e-107 391.7 255 76.5
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 7.2e-107 391.0 273 73.3
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 9.4e-107 390.6 249 77.5
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 9.4e-107 390.6 255 76.1
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.2e-106 390.2 249 77.5
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.2e-106 390.2 245 78.4
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.2e-106 390.2 245 78.0
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.6e-106 389.8 245 78.0
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.6e-106 389.8 233 79.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 2.7e-106 389.0 243 79.0
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 3.6e-106 388.7 236 78.8
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 3.6e-106 388.7 233 79.8
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.6e-106 388.7 244 77.0
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.7e-106 388.3 255 74.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 4.7e-106 388.3 236 78.4
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 4.7e-106 388.3 255 76.9
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 4.7e-106 388.3 234 80.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.9e-106 387.5 254 76.0
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.0e-105 387.1 242 76.0
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.0e-105 387.1 255 73.7
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.3e-105 386.0 245 76.7
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.3e-105 386.0 242 76.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.0e-105 385.6 233 79.8
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.9e-105 385.2 240 77.9
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 3.9e-105 385.2 244 76.6
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 6.7e-105 384.4 247 77.7
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.7e-105 384.4 255 74.9
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 8.8e-105 384.0 254 74.4
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 8.8e-105 384.0 247 77.3
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.1e-104 383.6 254 73.6
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.1e-104 383.6 244 75.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.0e-104 382.9 234 78.6
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.6e-104 382.5 236 77.1
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.6e-104 382.5 247 76.1
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 5.7e-104 381.3 241 77.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 5.7e-104 381.3 255 73.3
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 7.4e-104 380.9 244 75.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.3e-103 380.2 242 77.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.7e-103 379.8 242 77.3
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-103 379.8 244 75.4
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.8e-103 379.0 249 74.7
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.8e-103 379.0 244 77.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.8e-103 379.0 255 74.1
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 6.3e-103 377.9 242 76.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.8e-102 376.3 239 76.2
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.4e-102 375.9 242 76.4
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 3.1e-102 375.6 242 76.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-102 375.6 242 76.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 3.1e-102 375.6 242 76.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 7.0e-102 374.4 242 75.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.2e-101 373.6 254 72.0
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.5e-101 373.2 242 75.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.0e-101 372.9 248 75.0
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-101 372.9 234 78.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.6e-101 372.5 242 74.8
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.5e-101 372.1 236 75.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 7.7e-101 370.9 239 75.7
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 2.9e-100 369.0 277 70.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 3.8e-100 368.6 260 71.9
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.5e-99 365.9 249 73.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 9.4e-99 364.0 264 70.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.6e-98 363.2 239 75.3
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.1e-98 362.8 253 72.7
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.3e-97 359.4 284 66.2
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.2e-97 358.2 250 70.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.3e-96 355.5 221 77.8
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 7.4e-96 354.4 292 65.1
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 9.7e-96 354.0 242 72.3
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.3e-95 353.6 244 71.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.3e-95 353.6 242 72.7
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.2e-95 352.8 240 74.6
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.8e-95 351.7 317 59.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 6.3e-95 351.3 224 75.0
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 8.2e-95 350.9 236 72.9
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.2e-92 342.8 255 68.6
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.5e-91 340.1 226 73.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.8e-89 333.2 226 69.9
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.0e-89 332.4 227 70.0
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.2e-87 326.2 228 69.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.8e-87 325.9 243 68.7
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.7e-87 325.5 203 76.8
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.8e-86 323.2 228 68.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.6e-85 320.1 225 66.7
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 3.5e-85 318.9 205 78.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.5e-85 318.9 205 78.0
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-84 316.2 213 70.9
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 5.0e-84 315.1 255 65.1
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.1e-82 308.1 204 73.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 8.0e-82 307.8 204 75.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.3e-79 300.4 219 67.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 2.4e-78 296.2 204 72.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 5.5e-75 285.0 261 59.8
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-68 264.2 230 56.1
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.0e-65 254.2 216 57.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.1e-65 252.7 230 57.4
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 6.4e-63 245.0 246 55.7
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 5.4e-62 241.9 375 42.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.0e-60 236.1 221 52.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.0e-60 236.1 221 52.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.6e-58 230.3 142 78.2
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.6e-58 230.3 142 78.2
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-56 223.4 133 78.9
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.7e-52 210.3 255 45.1
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.3e-52 209.9 234 47.0
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-52 209.5 260 44.2
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.7e-45 186.4 136 66.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.8e-41 173.7 114 75.4
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 2.4e-41 173.3 137 65.7
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.1e-41 172.9 112 73.2
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.1e-38 164.5 109 67.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 3.5e-37 159.5 123 65.9
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.6e-35 151.4 97 77.3
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.4e-33 146.7 97 77.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.9e-30 137.1 81 80.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.8e-26 123.2 101 65.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.8e-25 120.6 92 65.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.0e-20 104.8 114 55.3
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 6.7e-20 102.1 67 73.1
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.7e-18 96.3 105 56.2
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 6.9e-17 92.0 96 53.1
HanXRQChr02g0035921 Helianthus annuus HOM05D004985 ORTHO05D005912 1.5e-08 64.3 35 91.4
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.4e-08 63.2 177 31.6
HanXRQChr04g0109031 Helianthus annuus HOM05D000055 ORTHO05D221909 3.2e-06 56.6 38 81.6


User provided reference genes

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