Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.1e-30 136.0 66 100.0
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.7e-12 75.5 59 67.8
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.3e-12 75.1 59 66.1
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 8.6e-12 73.2 59 66.1
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 9.5e-11 69.7 60 65.0
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 9.5e-11 69.7 59 61.0
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-10 68.9 59 61.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.8e-10 68.2 60 65.0
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.7e-10 67.4 50 68.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.7e-10 67.4 56 57.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.1e-10 67.0 59 61.0
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.1e-10 67.0 59 61.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.1e-10 67.0 59 61.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 8.0e-10 66.6 59 55.9
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.0e-09 66.2 60 63.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.0e-09 66.2 50 62.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.0e-09 66.2 50 64.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-09 65.9 50 60.0
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-09 65.5 59 59.3
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 2.3e-09 65.1 59 55.9
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.3e-09 65.1 59 57.6
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.3e-09 65.1 59 59.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 3.1e-09 64.7 59 59.3
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-09 64.7 59 57.6
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.1e-09 64.7 59 59.3
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 4.0e-09 64.3 50 60.0
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.0e-09 64.3 59 55.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 5.2e-09 63.9 59 54.2
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.8e-09 63.5 50 60.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 8.9e-09 63.2 51 58.8
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 8.9e-09 63.2 50 62.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 8.9e-09 63.2 59 54.2
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.2e-08 62.8 46 67.4
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.2e-08 62.8 59 52.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.2e-08 62.8 50 62.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-08 62.8 50 62.0
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.2e-08 62.8 51 58.8
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.2e-08 62.8 51 58.8
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.5e-08 62.4 59 54.2
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.5e-08 62.4 59 55.9
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.5e-08 62.4 51 58.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.0e-08 62.0 59 52.5
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.6e-08 61.6 50 60.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.6e-08 61.6 59 52.5
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.6e-08 61.6 58 55.2
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.6e-08 61.6 59 50.8
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.4e-08 61.2 59 52.5
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 3.4e-08 61.2 59 52.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 3.4e-08 61.2 59 57.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 4.4e-08 60.8 59 54.2
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 5.8e-08 60.5 59 55.9
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 5.8e-08 60.5 58 56.9
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 7.5e-08 60.1 58 53.4
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 7.5e-08 60.1 58 53.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 7.5e-08 60.1 59 50.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 7.5e-08 60.1 59 52.5
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 9.8e-08 59.7 59 54.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 9.8e-08 59.7 49 55.1
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.3e-07 59.3 59 52.5
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.7e-07 58.9 50 56.0
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.2e-07 58.5 60 55.0
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.2e-07 58.5 60 55.0
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.9e-07 58.2 59 50.8
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.9e-07 58.2 50 54.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.9e-07 58.2 49 55.1
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 3.7e-07 57.8 49 57.1
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.7e-07 57.8 59 50.8
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.9e-07 57.4 59 49.2
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.9e-07 57.4 59 49.2
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.9e-07 57.4 59 54.2
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.4e-07 57.0 50 54.0
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.4e-07 57.0 50 54.0
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.4e-07 57.0 60 53.3
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 8.3e-07 56.6 50 58.0
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 8.3e-07 56.6 59 49.2
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 8.3e-07 56.6 59 47.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 8.3e-07 56.6 54 53.7
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 8.3e-07 56.6 59 49.2
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.1e-06 56.2 60 50.0
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.1e-06 56.2 50 58.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.4e-06 55.8 49 51.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.9e-06 55.5 49 51.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.9e-06 55.5 59 45.8
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.4e-06 55.1 59 50.8
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.4e-06 55.1 60 51.7
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 3.2e-06 54.7 59 50.8
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.2e-06 54.7 50 56.0
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 3.2e-06 54.7 50 50.0
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 3.2e-06 54.7 51 58.8
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.2e-06 54.7 50 50.0
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 4.1e-06 54.3 50 50.0
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 5.4e-06 53.9 50 48.0
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 5.4e-06 53.9 50 48.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 5.4e-06 53.9 50 48.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 5.4e-06 53.9 51 56.9
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 5.4e-06 53.9 51 52.9
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 7.0e-06 53.5 59 49.2
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 7.0e-06 53.5 50 52.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 9.2e-06 53.1 50 48.0
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 9.2e-06 53.1 50 48.0
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 9.2e-06 53.1 50 48.0
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 9.2e-06 53.1 58 43.1


User provided reference genes

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