Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 8.2e-230 800.0 408 100.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.2e-169 597.8 410 77.8
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.1e-155 551.6 433 71.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.0e-111 406.8 436 55.5
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.7e-110 403.7 441 54.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.4e-109 400.6 436 55.3
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.4e-106 389.0 423 55.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.3e-105 385.2 435 54.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 8.2e-105 384.8 445 52.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.1e-104 382.5 420 52.6
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.3e-102 377.5 423 54.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.5e-101 373.2 440 52.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.6e-100 369.4 416 54.8
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 3.6e-100 369.4 449 51.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 6.1e-100 368.6 404 55.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.1e-100 368.6 431 54.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 8.0e-100 368.2 424 54.5
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.8e-99 367.1 434 52.8
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 5.2e-99 365.5 411 54.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-98 364.4 439 52.4
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.5e-98 364.0 420 53.6
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 7.5e-98 361.7 402 55.0
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.3e-97 360.9 436 53.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.3e-97 360.9 413 54.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 4.8e-97 359.0 406 54.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.8e-97 359.0 413 54.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 8.3e-97 358.2 424 54.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.4e-96 356.7 422 53.1
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 5.3e-96 355.5 433 54.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 9.1e-96 354.8 438 51.1
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.2e-95 354.4 425 53.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-95 354.0 434 52.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.0e-95 353.6 441 49.4
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 4.5e-95 352.4 440 51.6
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 7.7e-95 351.7 411 53.5
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.7e-94 350.5 411 50.9
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.2e-94 350.1 425 52.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.9e-94 349.7 423 52.5
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.8e-94 349.4 431 51.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 5.0e-94 349.0 437 50.6
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.1e-93 347.8 422 51.7
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.1e-93 347.8 422 51.7
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 4.2e-93 345.9 479 48.2
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.2e-93 345.9 426 50.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.5e-93 345.5 429 50.6
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.5e-93 345.5 443 51.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.5e-93 345.5 436 50.7
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.6e-92 344.0 420 51.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.1e-92 343.6 436 51.8
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.6e-92 342.8 425 51.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 4.7e-92 342.4 462 49.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.0e-92 341.7 436 51.4
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.8e-91 340.5 427 50.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.3e-91 340.1 416 50.5
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 3.0e-91 339.7 428 49.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.8e-91 338.6 422 50.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.8e-91 338.6 436 49.5
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.6e-90 336.7 431 51.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.4e-90 336.3 411 50.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 4.4e-90 335.9 437 49.9
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 7.5e-90 335.1 437 49.7
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 9.8e-90 334.7 415 50.1
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.3e-89 334.3 420 49.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.7e-89 334.0 435 49.9
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.7e-89 334.0 438 48.9
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 3.7e-89 332.8 411 48.7
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 6.3e-89 332.0 427 49.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.1e-88 331.3 406 50.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.8e-88 330.5 441 50.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 7.0e-88 328.6 403 50.1
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-87 327.0 436 48.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 5.9e-87 325.5 441 48.1
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.3e-86 324.3 413 49.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.3e-86 324.3 435 48.3
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.6e-86 322.0 439 48.5
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.6e-86 321.6 435 50.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.5e-85 318.9 417 50.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.8e-84 316.6 425 47.8
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.6e-84 316.2 415 48.2
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.0e-83 314.7 429 48.5
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.0e-83 314.7 504 43.1
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.7e-81 307.4 414 47.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.7e-81 307.4 427 48.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.4e-80 304.3 410 48.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.2e-80 303.1 409 47.9
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.0e-79 300.4 414 46.6
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.0e-79 300.4 439 46.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.7e-79 300.1 427 45.4
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.7e-79 300.1 413 47.7
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-78 298.1 438 46.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.3e-78 297.7 413 46.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.3e-78 297.7 426 45.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.7e-78 297.4 416 46.9
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.7e-78 297.4 429 46.6
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.0e-78 295.8 412 47.3
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.1e-77 294.7 416 47.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.6e-77 292.4 426 46.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.1e-76 290.4 410 44.9
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.8e-76 290.0 420 46.9
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.8e-76 290.0 420 46.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.6e-76 289.7 416 47.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.0e-76 288.5 410 47.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.2e-74 284.6 406 47.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-74 283.9 410 46.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.5e-74 282.0 410 46.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.2e-73 280.4 436 44.5
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 3.7e-73 279.6 456 44.1
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.3e-70 271.2 310 53.5
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.7e-70 270.8 301 53.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.3e-70 270.4 297 56.9
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 9.5e-69 265.0 449 42.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.6e-68 264.2 611 34.4
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.1e-67 261.5 314 52.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.1e-64 251.5 433 43.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.3e-59 233.8 462 39.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.1e-56 223.0 405 40.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.1e-56 223.0 405 40.0
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.5e-55 219.9 417 40.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.9e-53 214.2 409 41.1
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.6e-44 184.5 183 56.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.8e-41 173.3 458 33.8
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 9.3e-40 168.7 467 34.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.5e-37 160.6 293 41.0
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.5e-37 160.6 173 54.3
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.8e-36 157.1 278 41.7
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 4.2e-32 143.3 273 40.7
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.1e-31 141.0 268 41.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.1e-28 129.0 187 44.4
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.8e-27 127.9 300 35.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.9e-22 110.2 586 28.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 6.7e-22 109.4 413 30.5
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.4e-21 105.9 410 32.7
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 9.6e-21 105.5 229 38.4
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.8e-20 103.2 100 57.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 3.1e-19 100.5 136 48.5
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.1e-19 100.1 222 38.7
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.5e-18 96.7 127 48.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 7.1e-16 89.4 135 43.7
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.1e-16 89.4 96 52.1
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.7e-13 79.7 127 40.9
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 5.9e-10 69.7 356 28.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.2e-09 67.8 123 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.8e-09 67.0 399 28.1
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.1e-08 65.5 96 44.8
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-08 65.1 51 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.9e-06 57.0 224 29.0
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 3.9e-06 57.0 41 73.2


User provided reference genes

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